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Sample GSM5397 Query DataSets for GSM5397
Status Public on Apr 02, 2003
Title S62
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S62
mAdb experiment ID: 28322
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0936653 1 1 1 891 244 141 28 1016 294 213 37 0 0.806 -0.0936653
159763 -0.1870873 2 1 1 412 184 132 23 576 197 204 35 0 0.650 -0.1870873
159764 0.3934003 3 1 1 1842 553 116 23 794 188 192 33 0 2.474 0.3934003
159765 0.7979603 4 1 1 1110 697 135 25 332 136 198 39 0 6.280 0.7979603
159766 0.0136803 1 2 1 329 154 140 26 373 125 215 39 0 1.032 0.0136803
159767 0.1189263 2 2 1 493 155 138 24 439 126 206 34 0 1.315 0.1189263
159768 0.0740853 3 2 1 384 131 123 24 386 109 196 33 0 1.186 0.0740853
159769 -0.1313563 4 2 1 663 137 137 25 817 171 203 42 0 0.739 -0.1313563
159770 -0.8477123 1 3 1 332 176 151 28 1308 829 206 35 0 0.142 -0.8477123
159771 -0.0186343 2 3 1 306 150 135 295 364 117 210 2064 0 0.958 -0.0186343
159772 0.0476643 3 3 1 292 154 142 29 309 109 193 35 0 1.116 0.0476643
159773 -0.2365723 4 3 1 389 136 139 32 588 226 216 46 0 0.580 -0.2365723
159774 0.4106093 1 4 1 2406 812 157 30 953 416 199 33 0 2.574 0.4106093
159775 0.0696683 2 4 1 495 178 136 25 471 140 207 36 0 1.174 0.0696683
159776 0.0145213 3 4 1 277 135 150 27 304 99 198 33 0 1.034 0.0145213
159777 -0.0685423 4 4 1 421 222 137 27 486 190 199 36 0 0.854 -0.0685423
159778 -0.1985963 1 5 1 334 89 152 25 447 79 199 31 0 0.633 -0.1985963
159779 -0.2041203 2 5 1 225 105 133 25 334 101 207 34 0 0.625 -0.2041203
159780 -0.5466823 3 5 1 336 115 141 26 783 285 191 35 0 0.284 -0.5466823
159781 4 5 1 186 128 132 25 266 161 197 35 -50 0.675 -0.1706963

Total number of rows: 9128

Table truncated, full table size 655 Kbytes.




Supplementary data files not provided
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