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Sample GSM5400

Query DataSets for GSM5400

Status

Public on Apr 02, 2003

Title

S64

Sample type

RNA

Channel 1

Source name

hepatocellular carcinoma

Organism

Extracted molecule

total RNA

Channel 2

Source name

non-cancerous liver tissue

Organism

Extracted molecule

total RNA

Description

S64
mAdb experiment ID: 28326

Submission date

Apr 01, 2003

Last update date

Nov 21, 2005

Contact name

Xin Wei Wang

E-mail(s)

Phone

240-760-6858

Organization name

National Cancer Institute

Department

Laboratory of Human Carcinogenesis

Lab

Liver Carcinogenesis Unit

Street address

37 Convent Drive

City

Bethesda

State/province

MD

ZIP/Postal code

20892-4255

Country

USA

Platform ID

Series (1)

Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF	NCI mAdb well id
VALUE	same as UNF_VALUE but with flagged values removed
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) Mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median	Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) Mean Intensity
CH2_SD	Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median	Sample 2 Green Channel) Median Background Level
CH2_BKD_SD	Sample 2 Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE	Calibrated Ratio
UNF_VALUE	log ratio of PRE_VALUE

Data table
ID_REF	VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_Median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_Median	CH2_BKD_SD	Flag	PRE_VALUE	UNF_VALUE
159762	-0.0846003	1	1	1	517	153	103	15	735	199	260	33	0	0.823	-0.0846003
159763	0.0588053	2	1	1	301	88	102	17	406	93	242	31	0	1.145	0.0588053
159764	0.2291703	3	1	1	573	110	108	75	483	103	224	40	0	1.695	0.2291703
159765	0.0614523	4	1	1	262	102	129	19	351	107	242	31	0	1.152	0.0614523
159766	-0.3400843	1	2	1	189	60	111	21	434	108	273	48	0	0.457	-0.3400843
159767	0.1658383	2	2	1	303	79	109	17	364	89	239	32	0	1.465	0.1658383
159768	0.0976043	3	2	1	236	66	106	17	321	78	223	30	0	1.252	0.0976043
159769	-0.2873503	4	2	1	295	52	126	18	555	87	246	32	0	0.516	-0.2873503
159770	-0.2418453	1	3	1	372	215	103	14	697	355	254	51	0	0.573	-0.2418453
159771	0.4445133	2	3	1	335	171	105	17	310	91	232	32	0	2.783	0.4445133
159772		3	3	1	119	49	102	15	247	73	221	31	-50	0.617	-0.2097153
159773	-0.1844223	4	3	1	285	82	120	21	485	105	247	32	0	0.654	-0.1844223
159774	0.5455553	1	4	1	1608	495	105	15	656	147	252	34	0	3.512	0.5455553
159775	-0.0362123	2	4	1	216	56	101	16	348	85	230	30	0	0.920	-0.0362123
159776	-0.1784863	3	4	1	177	48	104	38	341	69	237	57	0	0.663	-0.1784863
159777	-0.2652003	4	4	1	183	97	118	17	353	117	240	50	0	0.543	-0.2652003
159778	-0.2034263	1	5	1	219	37	103	17	424	81	249	35	0	0.626	-0.2034263
159779	-0.4100503	2	5	1	137	60	97	14	325	87	228	29	0	0.389	-0.4100503
159780	-0.2160963	3	5	1	199	60	105	16	367	89	221	30	0	0.608	-0.2160963
159781	-0.0909793	4	5	1	337	96	123	23	488	97	239	29	0	0.811	-0.0909793

Total number of rows: 9128

Table truncated, full table size 648 Kbytes.

Supplementary data files not provided

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