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Sample GSM5401 Query DataSets for GSM5401
Status Public on Apr 02, 2003
Title S66
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S66
mAdb experiment ID: 28327
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.2941363 1 1 1 1182 313 259 61 1464 447 522 79 0 0.508 -0.2941363
159763 -0.1331223 2 1 1 848 127 267 56 914 152 505 73 0 0.736 -0.1331223
159764 -0.2132493 3 1 1 1074 302 260 53 1223 303 534 77 0 0.612 -0.2132493
159765 0.0269423 4 1 1 682 99 247 50 802 168 590 84 0 1.064 0.0269423
159766 0.1717263 1 2 1 678 130 254 232 668 104 520 79 0 1.485 0.1717263
159767 -0.0132283 2 2 1 634 149 271 53 696 115 502 75 0 0.970 -0.0132283
159768 -0.0127813 3 2 1 646 161 247 54 737 130 524 77 0 0.971 -0.0127813
159769 -0.2740883 4 2 1 676 135 242 51 1008 130 585 82 0 0.532 -0.2740883
159770 0.1195863 1 3 1 844 250 270 244 731 139 505 106 0 1.317 0.1195863
159771 0.0342273 2 3 1 528 118 263 49 633 112 506 73 0 1.082 0.0342273
159772 0.0572863 3 3 1 787 216 263 67 767 163 529 76 0 1.141 0.0572863
159773 4 3 1 410 310 248 53 631 211 563 78 -50 1.235 0.0916673
159774 -0.0177293 1 4 1 1058 272 267 79 932 180 505 98 0 0.960 -0.0177293
159775 0.0618293 2 4 1 737 210 261 52 731 224 517 76 0 1.153 0.0618293
159776 -0.1586413 3 4 1 475 156 238 71 688 105 511 76 0 0.694 -0.1586413
159777 -0.0599823 4 4 1 929 285 235 51 938 233 525 76 0 0.871 -0.0599823
159778 0.0107243 1 5 1 523 132 268 65 615 114 486 69 0 1.025 0.0107243
159779 -0.1243603 2 5 1 497 132 268 70 675 120 517 80 0 0.751 -0.1243603
159780 -0.8239093 3 5 1 339 137 212 59 939 182 501 75 0 0.150 -0.8239093
159781 -0.1605223 4 5 1 1198 399 246 60 1231 198 517 91 0 0.691 -0.1605223

Total number of rows: 9128

Table truncated, full table size 664 Kbytes.




Supplementary data files not provided
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