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Sample GSM540772 Query DataSets for GSM540772
Status Public on Nov 01, 2011
Title Cardiomyocytes HL-1_untreated_rep1
Sample type RNA
 
Source name Cardiomyocytes_untreated
Organism Mus musculus
Characteristics cell type: cardiomyocytes
cell line: HL-1
Growth protocol Cultured cardiomyocytes in claycomb medium in 37 degrees, 5% CO2
Extracted molecule total RNA
Extraction protocol Cardiomyocytes were put in RNAlater, Qiagen miRNEasy Mini Kit was used to extract total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description Chip sample 4613963055_F
Data processing Cubic spline normalization, subtracted background, False Discovery Rate.
Illumina Beadstudio 3.3 was used with gene expression module 3.4.0
 
Submission date May 05, 2010
Last update date Nov 01, 2011
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE21675 Cultured cardiomyocytes treated with hyaluronan

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 19.66231 45 4.911674 0.002506266
ILMN_2721178 1525.15 40 64.10748 0
ILMN_3033922 2.607502 44 3.334932 0.2568922
ILMN_3092673 351.0605 38 21.24105 0
ILMN_2816356 -6.37493 39 2.807262 0.933584
ILMN_2808939 -5.500999 27 3.739698 0.8984963
ILMN_2634564 9.40086 42 3.98678 0.03759398
ILMN_2737647 -0.1448121 34 2.766166 0.4761905
ILMN_2734484 0.4989082 51 3.013084 0.4172932
ILMN_2952292 1.084378 42 3.225184 0.3746867
ILMN_2699078 -1.61044 42 3.665915 0.622807
ILMN_1213681 23.26645 47 3.890014 0.001253133
ILMN_2735413 3.180529 44 3.260646 0.2230576
ILMN_2735415 13.22076 43 4.640539 0.01629073
ILMN_2891688 -5.002207 37 2.791104 0.8709273
ILMN_2637698 -0.3820474 41 2.968954 0.4974937
ILMN_2674228 158.8412 38 10.51079 0
ILMN_2601546 5.362832 29 5.39646 0.1203008
ILMN_1230831 -9.561283 30 3.469421 0.991228
ILMN_2848071 -2.222402 28 4.394598 0.6754386

Total number of rows: 25697

Table truncated, full table size 1089 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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