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Sample GSM540773 Query DataSets for GSM540773
Status Public on Nov 01, 2011
Title Cardiomyocytes HL-1_untreated_rep2
Sample type RNA
 
Source name Cardiomyocytes_untreated
Organism Mus musculus
Characteristics cell type: cardiomyocytes
cell line: HL-1
Growth protocol Cultured cardiomyocytes in claycomb medium in 37 degrees, 5% CO2
Extracted molecule total RNA
Extraction protocol Cardiomyocytes were put in RNAlater, Qiagen miRNEasy Mini Kit was used to extract total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description Chip sample 4613963055_G
Data processing Cubic spline normalization, subtracted background, False Discovery Rate.
Illumina Beadstudio 3.3 was used with gene expression module 3.4.0
 
Submission date May 05, 2010
Last update date Nov 01, 2011
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE21675 Cultured cardiomyocytes treated with hyaluronan

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 20.78682 48 5.270572 0.007518797
ILMN_2721178 1628.459 44 57.1846 0
ILMN_3033922 12.71012 45 3.744439 0.02506266
ILMN_3092673 364.6677 53 17.60818 0
ILMN_2816356 -9.468897 41 2.889291 0.9937344
ILMN_2808939 -3.091609 35 2.762336 0.7406015
ILMN_2634564 -4.178931 30 3.860461 0.8182957
ILMN_2737647 -4.681438 31 3.552994 0.8471178
ILMN_2734484 3.147112 36 4.359164 0.2406015
ILMN_2952292 2.847445 44 2.912961 0.2669173
ILMN_2699078 4.551068 41 3.932519 0.1779449
ILMN_1213681 15.21232 41 4.09952 0.01879699
ILMN_2735413 -8.174316 26 3.783357 0.9774436
ILMN_2735415 7.612002 37 4.585313 0.07393484
ILMN_2891688 -2.647422 31 4.140703 0.7130326
ILMN_2637698 7.401553 36 3.668707 0.07894737
ILMN_2674228 195.413 40 13.31586 0
ILMN_2601546 -2.971094 35 3.069522 0.7380952
ILMN_1230831 -1.003157 39 3.249806 0.575188
ILMN_2848071 0.7287788 46 3.43404 0.4348371

Total number of rows: 25697

Table truncated, full table size 1089 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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