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Sample GSM540774 Query DataSets for GSM540774
Status Public on Nov 01, 2011
Title Cardiomyocytes HL-1_6-mer oligo hyaluronan_rep1
Sample type RNA
 
Source name Cardiomyocytes_6-mer oligo hyaluronan
Organism Mus musculus
Characteristics cell type: cardiomyocytes
cell line: HL-1
Growth protocol Cultured cardiomyocytes in claycomb medium in 37 degrees, 5% CO2
Extracted molecule total RNA
Extraction protocol Cardiomyocytes were put in RNAlater, Qiagen miRNEasy Mini Kit was used to extract total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description Chip sample 4613963055_C
Data processing Cubic spline normalization, subtracted background, False Discovery Rate.
Illumina Beadstudio 3.3 was used with gene expression module 3.4.0
 
Submission date May 05, 2010
Last update date Nov 01, 2011
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE21675 Cultured cardiomyocytes treated with hyaluronan

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 15.41815 38 4.295745 0.01002506
ILMN_2721178 1534.65 32 136.5699 0
ILMN_3033922 10.47691 44 4.840194 0.03508772
ILMN_3092673 490.8749 37 43.47398 0
ILMN_2816356 -6.128826 44 3.048911 0.9298246
ILMN_2808939 6.488045 38 4.607201 0.09398496
ILMN_2634564 -7.787874 24 3.644918 0.9786968
ILMN_2737647 6.162801 40 5.071929 0.1002506
ILMN_2734484 -3.698883 41 3.071737 0.8057644
ILMN_2952292 -1.163786 50 2.975041 0.575188
ILMN_2699078 0.9028009 48 2.84209 0.4010025
ILMN_1213681 17.26294 46 4.63526 0.00877193
ILMN_2735413 -5.345421 33 3.451228 0.8984963
ILMN_2735415 10.9229 37 4.432698 0.03258145
ILMN_2891688 -0.928807 40 3.535438 0.5601504
ILMN_2637698 7.837392 47 3.752275 0.06766918
ILMN_2674228 173.7372 43 14.29118 0
ILMN_2601546 -1.899204 47 3.48133 0.6516291
ILMN_1230831 -10.04769 32 2.578973 0.9937344
ILMN_2848071 -3.759923 22 4.089183 0.8082707

Total number of rows: 25697

Table truncated, full table size 1088 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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