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Sample GSM540775 Query DataSets for GSM540775
Status Public on Nov 01, 2011
Title Cardiomyocytes HL-1_6-mer oligo hyaluronan_rep2
Sample type RNA
 
Source name Cardiomyocytes_6-mer oligo hyaluronan
Organism Mus musculus
Characteristics cell type: cardiomyocytes
cell line: HL-1
Growth protocol Cultured cardiomyocytes in claycomb medium in 37 degrees, 5% CO2
Extracted molecule total RNA
Extraction protocol Cardiomyocytes were put in RNAlater, Qiagen miRNEasy Mini Kit was used to extract total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description Chip sample 4613963055_D
Data processing Cubic spline normalization, subtracted background, False Discovery Rate.
Illumina Beadstudio 3.3 was used with gene expression module 3.4.0
 
Submission date May 05, 2010
Last update date Nov 01, 2011
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE21675 Cultured cardiomyocytes treated with hyaluronan

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 23.71165 50 3.196772 0.001253133
ILMN_2721178 1340.632 28 67.12393 0
ILMN_3033922 8.141852 49 3.467613 0.06015038
ILMN_3092673 496.3427 48 20.95429 0
ILMN_2816356 -7.644561 41 3.648774 0.9498747
ILMN_2808939 -0.3781537 36 3.515774 0.5125313
ILMN_2634564 12.28726 44 4.623847 0.02380952
ILMN_2737647 6.754411 44 3.950711 0.08521304
ILMN_2734484 1.138421 39 3.837952 0.3759398
ILMN_2952292 -1.086369 51 2.922473 0.5689223
ILMN_2699078 1.346436 56 3.209231 0.3609022
ILMN_1213681 19.26539 60 4.241609 0.005012531
ILMN_2735413 -4.706977 22 3.620436 0.8383459
ILMN_2735415 5.360011 44 4.310453 0.1253133
ILMN_2891688 -6.439187 33 2.823636 0.9160401
ILMN_2637698 5.582237 46 3.480647 0.1190476
ILMN_2674228 133.8414 39 9.751566 0
ILMN_2601546 2.75956 51 3.395904 0.2593985
ILMN_1230831 -11.26227 31 3.406468 0.9937344
ILMN_2848071 0.5691845 32 4.034582 0.424812

Total number of rows: 25697

Table truncated, full table size 1088 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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