NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM540776 Query DataSets for GSM540776
Status Public on Nov 01, 2011
Title Cardiomyocytes HL-1_1000kDA hyaluronan_rep1
Sample type RNA
 
Source name Cardiomyocytes_1000kDA hyaluronan
Organism Mus musculus
Characteristics cell type: cardiomyocytes
cell line: HL-1
Growth protocol Cultured cardiomyocytes in claycomb medium in 37 degrees, 5% CO2
Extracted molecule total RNA
Extraction protocol Cardiomyocytes were put in RNAlater, Qiagen miRNEasy Mini Kit was used to extract total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description Chip sample 4613963055_A
Data processing Cubic spline normalization, subtracted background, False Discovery Rate.
Illumina Beadstudio 3.3 was used with gene expression module 3.4.0
 
Submission date May 05, 2010
Last update date Nov 01, 2011
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE21675 Cultured cardiomyocytes treated with hyaluronan

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 69.93293 39 8.698607 0
ILMN_2721178 394.7191 51 16.38507 0
ILMN_3033922 13.92777 50 3.810038 0.03258145
ILMN_3092673 908.4709 50 31.07598 0
ILMN_2816356 -5.761323 41 3.151565 0.914787
ILMN_2808939 -2.789005 38 3.341861 0.7431078
ILMN_2634564 41.80099 38 9.816851 0
ILMN_2737647 2.176122 40 4.000573 0.320802
ILMN_2734484 2.619282 35 4.468723 0.2794486
ILMN_2952292 4.816111 50 4.26671 0.160401
ILMN_2699078 -6.198612 49 2.810847 0.9310777
ILMN_1213681 8.647322 34 5.513213 0.07017544
ILMN_2735413 -3.626917 38 3.971851 0.7969925
ILMN_2735415 1.155405 28 3.66415 0.39599
ILMN_2891688 4.561142 38 5.298625 0.1729323
ILMN_2637698 4.79927 58 3.206628 0.1616541
ILMN_2674228 61.83664 51 7.75991 0
ILMN_2601546 4.876906 46 4.130312 0.1591479
ILMN_1230831 -1.569245 30 3.283873 0.6390978
ILMN_2848071 -1.293733 30 4.257866 0.6115288

Total number of rows: 25697

Table truncated, full table size 1091 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap