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Sample GSM540777 Query DataSets for GSM540777
Status Public on Nov 01, 2011
Title CardiomyocytesHL-1_1000kDA hyaluronan_rep2
Sample type RNA
 
Source name Cardiomyocytes_1000kDA hyaluronan
Organism Mus musculus
Characteristics cell type: cardiomyocytes
cell line: HL-1
Growth protocol Cultured cardiomyocytes in claycomb medium in 37 degrees, 5% CO2
Extracted molecule total RNA
Extraction protocol Cardiomyocytes were put in RNAlater, Qiagen miRNEasy Mini Kit was used to extract total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description Chip sample 4613963055_B
Data processing Cubic spline normalization, subtracted background, False Discovery Rate.
Illumina Beadstudio 3.3 was used with gene expression module 3.4.0
 
Submission date May 05, 2010
Last update date Nov 01, 2011
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE21675 Cultured cardiomyocytes treated with hyaluronan

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 31.60134 41 7.057635 0.00877193
ILMN_2721178 1489.247 41 67.92178 0
ILMN_3033922 18.36051 43 5.204258 0.02506266
ILMN_3092673 543.7503 43 33.25035 0
ILMN_2816356 -7.375986 24 3.835835 0.9611529
ILMN_2808939 3.916544 39 3.856809 0.2130326
ILMN_2634564 0.3774647 28 4.251246 0.4949875
ILMN_2737647 3.962537 29 4.614084 0.2117794
ILMN_2734484 4.870666 39 4.075697 0.1766917
ILMN_2952292 2.153558 42 3.932598 0.3258145
ILMN_2699078 9.849995 46 4.531905 0.07142857
ILMN_1213681 20.53855 47 6.140577 0.02005013
ILMN_2735413 -8.176497 40 3.169686 0.9749373
ILMN_2735415 2.6543 41 2.649244 0.2894737
ILMN_2891688 -0.1826098 38 4.168521 0.537594
ILMN_2637698 8.189348 38 3.453647 0.09273183
ILMN_2674228 154.8658 51 12.34747 0
ILMN_2601546 1.765574 45 3.341422 0.3634085
ILMN_1230831 -4.081873 30 3.927491 0.8270677
ILMN_2848071 0.6479087 35 2.924262 0.4649123

Total number of rows: 25697

Table truncated, full table size 1097 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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