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Sample GSM540790 Query DataSets for GSM540790
Status Public on Nov 01, 2011
Title Fibroblasts NIH-3T3_control_rep1
Sample type RNA
 
Source name Fibroblasts_control
Organism Mus musculus
Characteristics cell type: fibroblasts
cell line: NIH-3T3
Growth protocol Cultured cardiomyocytes and fibroblasts in claycomb medium in 37 degrees, 5% CO2
Extracted molecule total RNA
Extraction protocol Fibroblasts were put in RNAlater, Qiagen miRNEasy Mini Kit was used to extract total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description Chip sample 4613963056_A
Data processing Cubic spline normalization, subtracted background, False Discovery Rate.
Illumina Beadstudio 3.3 was used with gene expression module 3.4.0
 
Submission date May 05, 2010
Last update date Nov 01, 2011
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE21677 Cultured fibroblasts treated with microvesicles from cardiomyocytes

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 -0.2835202 47 1.612091 0.5213032
ILMN_2721178 20.94835 43 2.993213 0
ILMN_3033922 6.222657 41 2.313545 0.03007519
ILMN_3092673 321.2713 35 11.40369 0
ILMN_2816356 -0.5059627 28 3.179734 0.556391
ILMN_2808939 2.461262 28 2.994317 0.2042606
ILMN_2634564 2.031578 22 3.445891 0.2468672
ILMN_2737647 -4.358966 30 1.659122 0.9649123
ILMN_2734484 1.939015 50 2.492474 0.254386
ILMN_2952292 4.844776 37 2.601443 0.05388471
ILMN_2699078 1.49563 41 1.848225 0.3145363
ILMN_1213681 3.54131 44 2.095818 0.1177945
ILMN_2735413 -3.273172 28 2.055351 0.9035088
ILMN_2735415 1.137531 26 2.274455 0.3471178
ILMN_2891688 1.067288 34 2.561159 0.358396
ILMN_2637698 3.583231 46 2.141418 0.112782
ILMN_2674228 81.52927 41 5.539095 0
ILMN_2601546 -0.603976 42 2.077606 0.5689223
ILMN_1230831 -5.415273 28 1.906699 0.9949875
ILMN_2848071 -2.94696 36 2.069519 0.8734336

Total number of rows: 25697

Table truncated, full table size 1097 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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