|
Status |
Public on Jul 09, 2021 |
Title |
Small_intestine_irradiated_24h_rep1 |
Sample type |
RNA |
|
|
Source name |
Small intestine, irradiated, t=24h
|
Organism |
Mus musculus |
Characteristics |
condition: Irradiated time point: 24 hours tissue type: Small intestinal tissue
|
Treatment protocol |
Mice were exposed to 12 gy whole-body ionizing gamma-irradiation, in half of the mice the epithelial fraction was isolated from the small intestine with EDTA.
|
Growth protocol |
Mice were housed in specific pathogen free conditions, fed regular chow.
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was isolated using TRI-reagent
|
Label |
Biotin
|
Label protocol |
Biotinylated cRNA were prepared with the Invitrogen Illumina Totalprep RNA amplification kit for Illumina arrays
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R
|
|
|
Submission date |
Jul 08, 2021 |
Last update date |
Jul 09, 2021 |
Contact name |
Sander Meisner |
E-mail(s) |
s.meisner@amsterdamumc.nl
|
Phone |
0031205668158
|
Organization name |
AMC
|
Department |
Tytgat institute
|
Lab |
DIGEST
|
Street address |
Meibergdreef 69-71
|
City |
Amsterdam |
State/province |
NH |
ZIP/Postal code |
1105BK |
Country |
Netherlands |
|
|
Platform ID |
GPL6885 |
Series (1) |
GSE179777 |
Small intestinal tissue and epithelial regeneration after 12 Gy whole-body irradiation of C57BL/6 wild type mice |
|