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Sample GSM5454 Query DataSets for GSM5454
Status Public on Apr 05, 2003
Title Spleen vs BAFF Treated B cell 30min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name BAFF Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BAFF for 30min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE372 Spleen vs BAFF Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.103169 36403.7 28706.3 65516.8 43814.1 65517 40472 0.669636 12969.7 953.628 717.168 931 718 105.249 56.162 0
2 -0.20185 526.933 331.059 1934 1177.5 1740.5 1189 513.138 162.96 1047.51 770.887 1000.5 749 190.376 105.237 0
3 0 52.237 42.2611 971.538 711.538 982 701.5 62.8078 47.7931 991.881 720.07 985 721 84.5374 45.7219 0
4 -0.174558 504.701 337.657 1903.15 1197.69 1819 1179.5 459.556 212.322 1056.85 781.603 1042 781 113.718 63.156 0
5 0 50.0946 37.9634 1029.19 775.286 1033 764 78.4956 49.7535 1035.62 791.29 1029 781 81.5667 57.472 0
6 -0.0565743 489.346 429.578 1874.93 1360.11 1837 1362 238.66 221.372 1059.21 807.616 1047 804 80.991 57.0099 0
7 -0.123282 69.6894 52.4667 1124.15 824.5 1116 831 114.092 49.2644 1079.95 820.36 1060.5 819 97.2192 61.8212 0
8 -0.0681277 61.8643 52.8826 1084.29 825.143 1101 822 69.3573 57.7021 1053.97 819.88 1048 817 93.4758 62.0109 0
9 0.312086 3374.9 6923.83 7910.92 9820.73 8004 9883.5 480.973 1198.35 1095.24 841.974 1084.5 831.5 107.185 79.1559 1.036727251
10 0.20278 839.176 1338.55 2605.76 2711.9 2600 2699 241.534 384.448 1124.18 862.162 1121 855.5 118.048 71.1524 0.673620579
11 0 59.1041 46.5128 952.846 764.115 958 751 69.9552 49.6559 964.797 766.545 947 764 96.8043 57.4917 0
12 -0.177151 85.5351 56.8844 1045.78 751.217 1059 736 102.894 59.1585 972.543 741.405 955.5 727.5 97.7285 60.7913 0
13 0 57.3457 45.7102 972.458 717.208 960.5 719 103.303 67.8957 964.789 721.886 955 717 95.1224 59.3515 0
14 0.0718351 692.068 816.552 2213.96 1870 1950 1291.5 872.886 1059.08 1030.29 748.592 1029 748 114.577 66.9346 0
15 0.263793 2910.91 5343.45 6915 7684.64 7419 6953 3633.37 4776.02 1052.77 765.875 1033.5 762 124.935 56.6723 0
16 0.0222223 1586.05 1669.32 3994.26 2956.15 4052 2842 453.503 583.563 993.519 735.069 982.5 736 95.3594 49.671 0.073820883
17 -0.59076 1063.34 272.843 2846.91 1054.39 2122 973 1647.04 242.131 993.879 730.656 976 723 88.7891 54.4933 0
18 0.0772819 432.249 516.436 1722 1429.14 1738.5 1418 165.361 209.662 1010.7 748.557 1008 749 88.0391 57.5533 0.256724915
19 0.266005 4615.04 8514.91 10326.8 11807.5 10233 11650 1148.8 1904.76 984.037 741.901 975 742 73.4521 54.4894 0.883649483
20 -0.242209 5740.45 3286.53 12619.9 4960.52 12286 4838 1173.81 727.693 977.819 738.6 971 738 83.3978 59.073 -0.804600882

Total number of rows: 16273

Table truncated, full table size 1963 Kbytes.




Supplementary data files not provided

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