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Sample GSM5458 Query DataSets for GSM5458
Status Public on Apr 05, 2003
Title Spleen vs BAFF Treated B cell 120min (set2)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name BAFF Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with BAFF for 120min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE372 Spleen vs BAFF Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0745196 59381.5 50018.6 65516.8 65517 65517 65517 0.669636 0.7698 945.669 1303.59 942 1297 29.3814 51.8572 0
2 -0.329015 82.2937 38.579 996.714 1272.86 998.5 1265.5 35.9463 67.0813 942.66 1265.47 937 1266 29.0558 62.2262 0
3 -0.262229 93.3672 51.0464 993.036 1135.5 992.5 1153 21.0211 59.2174 935.876 1162.66 938 1150 29.7751 89.5154 0
4 0 28.0901 29.65 928.607 1229.11 934.5 1222 23.6821 51.5639 932.014 1242.01 933 1241.5 20.0025 58.1868 0
5 0 32.7907 25.2458 924.286 1208.32 923 1219 22.3687 67.1047 925.049 1236.41 927 1236.5 22.5584 51.2817 0
6 -0.159131 321.827 223.096 1236 1464.5 1250 1478.5 65.9848 105.055 923.865 1209.28 923.5 1204 22.9091 48.0374 0
7 0 52.4522 16.0512 905.192 1148.85 902.5 1152 21.5945 68.783 917.994 1204.73 918 1206 21.6994 54.2195 0
8 -0.199716 46.254 29.2034 933.462 1203.31 936 1203 24.7891 42.7381 913.386 1202.12 914 1203 21.7117 48.1412 0
9 0.193642 3255.22 5084.2 4744.31 7135.15 4783.5 7152.5 185.914 273.221 911.199 1177.87 913.5 1169.5 20.505 51.9874 0.6432648
10 0.273806 668.788 1256.3 1625.45 2728.14 1647.5 2724 161.01 495.695 909.729 1175.66 909 1169.5 21.2724 45.1829 0.909563844
11 0 34.7325 26.5385 892.048 1182.9 895 1181 13.0018 45.5422 906.945 1173.43 908 1173 21.8838 44.2521 0
12 0.044154 32.7866 36.2953 904.462 1183.31 901.5 1193.5 22.4699 54.1714 908.031 1165.42 910 1169 24.7185 52.2735 0
13 0.182943 27.1655 41.3962 902.111 1182.67 905 1176 19.4072 42.8683 901.253 1158.01 901 1155 21.2235 49.8645 0
14 0.305897 535.199 1082.46 1454.19 2501.46 1240.5 1796.5 505.256 1300.32 893.79 1149.34 894 1146.5 21.9959 50.224 0
15 0.218501 3517.57 5817.6 5034.92 7959.19 5141.5 9019 3010.59 4746.19 892.356 1134.03 890 1134 21.7933 43.7126 0
16 0.356699 2146.16 4879.34 3409.5 6862.96 3361 6540 821.237 1982.94 891.81 1139.53 891 1142 23.2489 45.9109 1.18492843
17 -0.72659 270.098 50.6911 1130.55 1158.75 1084 1156.5 125.154 52.0474 883.516 1135.74 882 1136 23.5159 45.3481 0
18 0.351204 359.994 808.164 1247.71 2139.14 1249 2157 72.6605 142.401 885.337 1117.56 884 1121 21.8672 47.8764 1.166674435
19 0.356363 5809.26 13197.3 7664.26 16843.5 7830 17195 857.546 2006.8 884.134 1131.51 880 1126 25.0927 49.4121 1.183812262
20 0.0243108 6364.24 6730.65 8360.82 9043.29 8172.5 9084.5 795.278 1087.61 881.428 1107.8 880 1111 22.6192 45.6762 0.08075873

Total number of rows: 16273

Table truncated, full table size 1975 Kbytes.




Supplementary data files not provided
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