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Sample GSM546932 Query DataSets for GSM546932
Status Public on Jul 15, 2010
Title iTDPKO-1
Sample type SRA
 
Source name v26.2
Organism Mus musculus
Characteristics strain: C57BL/6
cell: ES cells
passages: 12 to 15
Treatment protocol ES cells were treated with 100ng/ml 4-hydroxytamoxyfen for 72 hours
Growth protocol Grown in N2B27 + Leukemia inhibitory factor, CHIR99021, and PD0325901
Extracted molecule total RNA
Extraction protocol Polyadenylated mRNA were harvested using oligo-dT dynabeads. The construction of the cDNA libraries were created according to the protocol described by Illumina.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description TDP-43 deleted
Data processing ELAND mapping
 
Submission date May 25, 2010
Last update date May 15, 2019
Contact name Jonathan Ling
E-mail(s) jling@jhu.edu
Phone 4105025189
Organization name Johns Hopkins University
Department Neuropathology
Lab Philip Wong
Street address 720 Rutland Ave.
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL9185
Series (1)
GSE21993 Deletion of Tardbp Down-Regulates Tbc1d1, a Gene Linked to Obesity, and Alters Body Fat Metabolism
Relations
SRA SRX021471
BioSample SAMN00014167

Supplementary file Size Download File type/resource
GSM546932_A_sorted.txt.gz 452.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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