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Status |
Public on Jul 15, 2010 |
Title |
iTDPKO-1 |
Sample type |
SRA |
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Source name |
v26.2
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Organism |
Mus musculus |
Characteristics |
strain: C57BL/6 cell: ES cells passages: 12 to 15
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Treatment protocol |
ES cells were treated with 100ng/ml 4-hydroxytamoxyfen for 72 hours
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Growth protocol |
Grown in N2B27 + Leukemia inhibitory factor, CHIR99021, and PD0325901
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Extracted molecule |
total RNA |
Extraction protocol |
Polyadenylated mRNA were harvested using oligo-dT dynabeads. The construction of the cDNA libraries were created according to the protocol described by Illumina.
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer |
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Description |
TDP-43 deleted
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Data processing |
ELAND mapping
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Submission date |
May 25, 2010 |
Last update date |
May 15, 2019 |
Contact name |
Jonathan Ling |
E-mail(s) |
jling@jhu.edu
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Phone |
4105025189
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Organization name |
Johns Hopkins University
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Department |
Neuropathology
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Lab |
Philip Wong
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Street address |
720 Rutland Ave.
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City |
Baltimore |
State/province |
MD |
ZIP/Postal code |
21205 |
Country |
USA |
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Platform ID |
GPL9185 |
Series (1) |
GSE21993 |
Deletion of Tardbp Down-Regulates Tbc1d1, a Gene Linked to Obesity, and Alters Body Fat Metabolism |
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Relations |
SRA |
SRX021471 |
BioSample |
SAMN00014167 |
Supplementary file |
Size |
Download |
File type/resource |
GSM546932_A_sorted.txt.gz |
452.2 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Processed data provided as supplementary file |
Raw data are available in SRA |
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