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Sample GSM5488 Query DataSets for GSM5488
Status Public on Apr 05, 2003
Title Spleen vs CD27 Treated B cell 60min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CD27 Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CD27 for 60min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE375 Spleen vs CD27 Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.113543 56326.4 43368 65516.4 65516.9 65516 65517 0.57275 0.755929 843.325 957.287 839 950 37.3787 68.4548 0
2 -0.302374 195.882 97.6382 972.913 1008.91 983 1008 55.1732 64.4494 819.849 893.252 816 892 30.6445 54.3613 0
3 0.0508844 37.2236 41.8507 804.16 917.08 793 904 32.7334 73.4897 816.362 893.454 815 894.5 29.1394 72.1051 0
4 -0.320343 54.0043 25.8277 836.545 905.545 835.5 905.5 29.8388 24.632 818.628 923.095 815 918 32.9465 55.2485 0
5 0.0219914 39.0775 41.1072 818.56 938.56 817 941 36.1698 56.1917 815.936 918.894 814 922 31.4061 53.4597 0
6 -0.119229 546.73 415.474 1405.52 1472.52 1407 1404 99.0712 172.59 824.301 899.336 820 900.5 34.4394 48.8339 0
7 -0.273771 54.944 29.2516 834.5 862.929 834 867.5 42.6949 64.7576 815.442 868.788 810 865 33.6686 54.891 0
8 -0.325321 51.1299 24.1743 821.167 822.167 819.5 821.5 23.5033 41.7067 805.592 838.286 804 835 27.5449 50.2303 0
9 0.162479 6886.22 10010.6 9128.19 14934.7 9256 14986 466.011 852.496 813.461 854.299 810 844.5 35.7027 54.9106 0.539743555
10 0.410165 717.434 1844.79 1611.76 3530.59 1601 3250 226.037 906.129 814.394 844.639 813 839 30.5959 44.8955 1.362538637
11 0 48.4317 40.9886 825.12 865.2 822 847 42.4729 48.6518 819.298 846.119 814 839 39.0731 53.6433 0
12 0 52.6989 25.3476 810.913 827.522 811 838 19.4747 36.7546 821.362 839.25 813 835.5 40.7167 52.282 0
13 0.0780339 35.4353 42.4101 801.708 858.75 803 858.5 19.0685 33.9504 807.707 835.207 808 835 28.1357 42.0491 0
14 0.13907 1070.46 1474.49 2019.61 2977.32 2031.5 3042.5 228.572 344.666 813.026 852.02 810 849 28.9734 55.4644 0.46198054
15 0.0109518 2803.79 2875.39 4139.52 4917.24 2106 2314 3219.06 3970.15 818.628 861.101 818 861.5 32.2887 54.8101 0
16 0.172116 1458.85 2168.34 2495.25 3942.68 2034.5 3243.5 863.827 1525.49 811.153 842.994 808 839 29.104 50.5955 0
17 -0.465424 528.696 181.043 1348.32 1075.05 1309 1070 216.304 76.746 817.779 848.174 812 841 31.79 47.214 -1.546105062
18 -0.0499316 588.842 524.888 1445.16 1588.56 1440 1589 89.1603 84.5966 812.103 852.853 811 852 33.4524 49.1738 -0.165869185
19 0.340946 6036.11 13234.4 8099.71 19499 8385.5 19833 973.53 1987.82 817.381 855.181 813 850 30.5893 46.6219 1.132598096
20 -0.101259 5811.82 4603.13 7792.36 7329.21 7670.5 7198.5 754.155 660.927 815.329 857.477 814 850 30.9875 52.6947 -0.336375117

Total number of rows: 16273

Table truncated, full table size 1981 Kbytes.




Supplementary data files not provided

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