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Sample GSM550800 Query DataSets for GSM550800
Status Public on Jun 08, 2010
Title Sputum from Stage II Moderate, biological replicate 11
Sample type RNA
 
Source name Sputum from COPD Stage II Moderate
Organism Homo sapiens
Characteristics age: 63
gender: F
gold stage: Stage II
group: Moderate
plateid: 1
batch: A
hyb date: 39322
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Biotin
Label protocol NuGEN Ovation FLv2 methodology using NuGEN Ovation RNA amplification v2 including C1 spike with Agencourt RNAClean SPIA clean up. FLv2 biotin fragmentation and labelling.
 
Hybridization protocol Following fragmentation, 3.75 ug of cDNA were hybridized for 16 hr at 45C on GeneChip HG-U133_plus_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
Description Gene expression data from COPD Stage II Moderate
Data processing The data was analysed with Rosetta Resolver version 5.0
 
Submission date Jun 04, 2010
Last update date Jun 07, 2010
Contact name steve matthew fox
E-mail(s) steven.m.fox@gsk.com
Phone 01438 763226
Organization name GlaxoSmithKline
Department Statistics
Street address Gunnels Wood Road
City Stevenage
ZIP/Postal code SG1 2NY
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE22148 Induced Sputum Genes Associated With Spirometroc and Radiological Disease Severity in COPD Ex-smokers

Data table header descriptions
ID_REF
VALUE Rosetta Resolver 5.0 Nomalised Intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 619.03552
AFFX-BioB-M_at 1031.45374
AFFX-BioB-3_at 952.79053
AFFX-BioC-5_at 1941.43042
AFFX-BioC-3_at 1395.68213
AFFX-BioDn-5_at 3093.56104
AFFX-BioDn-3_at 5382.27637
AFFX-CreX-5_at 7410.69189
AFFX-CreX-3_at 8347.59668
AFFX-DapX-5_at 48.68215
AFFX-DapX-M_at 4.6169
AFFX-DapX-3_at 17.29263
AFFX-LysX-5_at 13.08823
AFFX-LysX-M_at 12.14843
AFFX-LysX-3_at 8.53204
AFFX-PheX-5_at 17.41674
AFFX-PheX-M_at 11.41192
AFFX-PheX-3_at 32.50715
AFFX-ThrX-5_at 11.94063
AFFX-ThrX-M_at 17.51081

Total number of rows: 54675

Table truncated, full table size 1070 Kbytes.




Supplementary file Size Download File type/resource
GSM550800.CEL.gz 5.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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