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Sample GSM550822 Query DataSets for GSM550822
Status Public on Jun 08, 2010
Title Sputum from Stage II Moderate, biological replicate 29
Sample type RNA
 
Source name Sputum from COPD Stage II Moderate
Organism Homo sapiens
Characteristics age: 57
gender: F
gold stage: Stage II
group: Moderate
plateid: 1
batch: A
hyb date: 39322
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Biotin
Label protocol NuGEN Ovation FLv2 methodology using NuGEN Ovation RNA amplification v2 including C1 spike with Agencourt RNAClean SPIA clean up. FLv2 biotin fragmentation and labelling.
 
Hybridization protocol Following fragmentation, 3.75 ug of cDNA were hybridized for 16 hr at 45C on GeneChip HG-U133_plus_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
Description Gene expression data from COPD Stage II Moderate
Data processing The data was analysed with Rosetta Resolver version 5.0
 
Submission date Jun 04, 2010
Last update date Jun 07, 2010
Contact name steve matthew fox
E-mail(s) steven.m.fox@gsk.com
Phone 01438 763226
Organization name GlaxoSmithKline
Department Statistics
Street address Gunnels Wood Road
City Stevenage
ZIP/Postal code SG1 2NY
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE22148 Induced Sputum Genes Associated With Spirometroc and Radiological Disease Severity in COPD Ex-smokers

Data table header descriptions
ID_REF
VALUE Rosetta Resolver 5.0 Nomalised Intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 568.59338
AFFX-BioB-M_at 893.88373
AFFX-BioB-3_at 790.81049
AFFX-BioC-5_at 1839.14526
AFFX-BioC-3_at 1300.54651
AFFX-BioDn-5_at 3050.46924
AFFX-BioDn-3_at 4825.47656
AFFX-CreX-5_at 7198.68506
AFFX-CreX-3_at 8127.31299
AFFX-DapX-5_at 40.22075
AFFX-DapX-M_at 5.4812
AFFX-DapX-3_at 26.01029
AFFX-LysX-5_at 15.11121
AFFX-LysX-M_at 3.53997
AFFX-LysX-3_at 7.99506
AFFX-PheX-5_at 13.82056
AFFX-PheX-M_at 15.7694
AFFX-PheX-3_at 23.65712
AFFX-ThrX-5_at 12.69613
AFFX-ThrX-M_at 10.90535

Total number of rows: 54675

Table truncated, full table size 1071 Kbytes.




Supplementary file Size Download File type/resource
GSM550822.CEL.gz 5.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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