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Sample GSM5526 Query DataSets for GSM5526
Status Public on Apr 05, 2003
Title Spleen vs CpG-oligodeoxynucleotide Treated B cell 120min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CpG-oligodeoxynucleotide Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CpG-oligodeoxynucleotide for 120min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE378 Spleen vs CpG-oligodeoxynucleotide Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.123407 42988.5 32355.4 59629.2 54629.9 62918 55464 6460.02 9256.97 639.298 647.834 635 644 30.3022 50.7894 0
2 -0.0538972 135.723 119.883 856.893 912.464 852.5 924.5 104.088 131.639 706.66 726.299 703 720 60.6526 67.2526 0
3 -0.138535 59.624 43.3397 788.923 798.192 785 799.5 45.2017 53.0487 736.92 749.304 733 751 50.206 67.6212 0
4 -0.364822 67.5728 29.1709 721.32 651.12 733 668 66.6438 107.622 669.45 680.556 657 678 53.6835 67.3931 0
5 -0.0533666 48.048 42.4922 686.542 754.708 683 754.5 42.453 51.9728 648.293 706.387 640.5 701 32.1019 62.8636 0
6 -0.249835 577.785 325.036 1359.21 1275.93 1341.5 1284 143.049 219.812 662.604 710.55 655 716 34.3503 71.461 0
7 -0.120623 55.017 41.6748 705.667 786.583 698 781 53.1394 52.808 659.271 740.507 655 732 33.3972 53.6891 0
8 -0.0708227 35.1224 29.8374 670.727 757.409 658.5 752.5 45.5571 54.9707 648.295 732.808 646.5 731 29.9356 51.0031 0
9 -0.0942945 3798.89 3057.47 5891.92 5779.92 5938 5855 451.684 802.842 663.186 743.212 657 734 31.2011 59.1364 -0.313239549
10 0.191639 446.158 693.629 1193.23 1977.77 1157.5 1809.5 167.85 568.413 656.763 731.395 652 723.5 28.9156 55.6844 0.636610978
11 0 28.3058 28.8241 613.929 587.821 606 602.5 23.3237 42.2103 612.074 595.093 610.5 578.5 27.7533 67.3709 0
12 0 22.8806 16.3635 603.385 548.115 603.5 550 17.0483 37.9203 599.282 560.397 594 556.5 22.3713 38.3538 0
13 0 23.6179 14.885 607.815 556.481 610 555 15.3097 25.3398 603.686 575.814 600.5 574 22.6721 35.535 0
14 0.0106386 593.137 607.846 1327.29 1659.68 1150.5 1353.5 534.317 830.737 607.733 574.391 605 573 20.5648 33.832 0
15 0.107943 3240.27 4154.56 5089.15 7477.38 4191 5340 3497.79 5650.61 619.187 638.28 618 649.5 22.9126 65.9115 0
16 0.192168 1668.1 2596.52 2837.61 5088.43 2953 5063 624.003 1303.58 623.335 675.5 620 674.5 24.0163 44.5269 0.638368278
17 -0.512593 1110.03 340.99 1975.07 1255.93 1364 1048 1207.07 482.216 614.271 664.8 612 665 20.4207 40.4824 0
18 0.0583071 805.428 921.157 1607.71 2278 1655.5 2343 232.975 331.045 607.185 643.287 607 642 21.3012 38.074 0.193691994
19 0.295186 4422.5 8726.77 6790.31 14858.5 6873.5 15350.5 952.723 2420.22 607.305 628.097 604.5 625.5 19.9739 37.8402 0.980586667
20 -0.126964 5058.65 3776.34 7626.8 6793 7582 6776 436.756 654.627 605.552 610.578 604 608 19.2853 36.5881 -0.421765279

Total number of rows: 16273

Table truncated, full table size 1952 Kbytes.




Supplementary data files not provided

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