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Sample GSM5575 Query DataSets for GSM5575
Status Public on Apr 05, 2003
Title Spleen vs fMLP Treated B cell 240min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name fMLP Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with fMLP for 240min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE381 Spleen vs fMLP Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0557733 42367.9 37261.8 65516.8 65516.7 65517 65517 0.738223 0.669636 717.89 909.031 717 904 31.1935 51.1531 0
2 -0.60759 128.185 31.6407 839.08 890.84 845 886 34.1735 36.4345 700.111 893.804 700 896 25.776 49.2186 0
3 0 22.8149 19.4786 691.556 886.593 704 888 28.248 45.8134 697.155 909.729 695 908 22.7608 51.8536 0
4 -0.67521 95.1286 20.0956 756.115 843.038 760.5 832 34.5836 62.1948 695.487 904.551 695.5 906 24.6607 57.472 0
5 0 28.989 24.5246 683.296 868 685 878 26.9598 45.1186 693.848 894.57 694 896 27.8008 67.9153 0
6 -0.377355 345.473 144.897 1166.78 1081.26 1159 1083 70.4756 61.2285 695.589 882.38 696 881 27.3245 62.1628 0
7 -0.510729 42.317 13.0553 701.192 838.462 699 849 26.5466 53.1964 696.594 902.813 695 903.5 20.7514 45.4126 0
8 -0.0101913 24.7472 24.1732 692 882.696 689 881 19.0764 37.4547 693.597 889.442 692 888 20.7426 47.0197 0
9 0.190294 2999.78 4649.26 5443.56 8551.44 5400 8532 350.785 597.565 692.542 868.135 689 862 23.32 49.7727 0.632142985
10 0.505886 587.785 1884.1 1546.64 4154.36 1562 3853.5 171.132 1008.63 693.069 884.612 692 880.5 24.5285 45.2226 1.680516916
11 -0.0780021 28.1687 23.5378 700.692 899.385 699 889.5 23.5589 41.812 698.325 908.429 697.5 904 22.4173 53.5301 0
12 -0.147755 28.9974 20.635 702.56 888.28 705 886 23.2057 32.5058 699.907 906.9 700 904.5 24.4881 52.3369 0
13 0 26.349 18.8125 703.148 909.519 702 909 24.7755 46.5431 707.957 927.832 708 929 26.7166 44.8973 0
14 0.287969 779.143 1512.12 1849.84 3513.2 1877 3428 122.527 322.536 706.442 909.032 701.5 908.5 23.813 53.3961 0.956612312
15 -0.0151675 2252.47 2175.16 4229.85 4496.88 1742 1983.5 4069.28 4326.95 703.927 902.887 701 900.5 26.605 49.7224 0
16 0.113118 1661.77 2156.2 3280.75 4482.29 2738 3641.5 1238.83 1817.16 707.851 890.773 703 885 26.2043 49.8782 0
17 -0.669483 844.435 180.752 1891.04 1141.3 1638 1090 598.282 183.68 708.987 873.821 710 872.5 21.1895 44.0451 0
18 0.268824 283.61 526.679 1089.96 1765.68 1091 1790 49.7948 112.955 711.35 856.963 712 864 22.4074 53.6267 0.893013998
19 0.284197 3078.09 5922.13 5577.36 10631.1 5744.5 11069 969.983 1785.33 705.113 818.73 704 816 22.7941 59.0394 0.944081999
20 -0.0853697 5481.24 4503.07 9386.11 8301.29 9320 8364 1243.37 1077.81 699.813 846.416 699 842 22.3378 57.211 -0.283592005

Total number of rows: 16273

Table truncated, full table size 1973 Kbytes.




Supplementary data files not provided

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