|
Status |
Public on Sep 14, 2021 |
Title |
C9 |
Sample type |
SRA |
|
|
Source name |
brain
|
Organism |
Mus musculus |
Characteristics |
tissue: hippocampus treatment: CTRL molecule type: translating RNA
|
Treatment protocol |
Chronic social defeat stress
|
Extracted molecule |
total RNA |
Extraction protocol |
TRAP RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Data processing |
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm10 genome assembly using STAR version 2.5.3a Reads falling on each gene are counted by HT-Seq Genome_build: mm10 Supplementary_files_format_and_content: rawcount.txt
|
|
|
Submission date |
Sep 13, 2021 |
Last update date |
Sep 14, 2021 |
Contact name |
Marina Schernthanner |
E-mail(s) |
mscherntha@rockefeller.edu
|
Organization name |
The Rockefeller University
|
Lab |
Laboratory of Mammalian Cell Biology and Development
|
Street address |
1230 York Ave.
|
City |
New York |
State/province |
New York |
ZIP/Postal code |
10065 |
Country |
USA |
|
|
Platform ID |
GPL19057 |
Series (1) |
GSE184027 |
RNAseq anaysis of hippocamal parvalbumin-positive interneurons in mice exposed to chronic social defat stress |
|
Relations |
BioSample |
SAMN21415668 |
SRA |
SRX12162742 |