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Sample GSM5576140 Query DataSets for GSM5576140
Status Public on Sep 14, 2021
Title S4
Sample type SRA
 
Source name brain
Organism Mus musculus
Characteristics tissue: hippocampus
treatment: Susceptiable (STR)
molecule type: translating RNA
Treatment protocol Chronic social defeat stress
Extracted molecule total RNA
Extraction protocol TRAP
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm10 genome assembly using STAR version 2.5.3a
Reads falling on each gene are counted by HT-Seq
Genome_build: mm10
Supplementary_files_format_and_content: rawcount.txt
 
Submission date Sep 13, 2021
Last update date Sep 14, 2021
Contact name Marina Schernthanner
E-mail(s) mscherntha@rockefeller.edu
Organization name The Rockefeller University
Lab Laboratory of Mammalian Cell Biology and Development
Street address 1230 York Ave.
City New York
State/province New York
ZIP/Postal code 10065
Country USA
 
Platform ID GPL19057
Series (1)
GSE184027 RNAseq anaysis of hippocamal parvalbumin-positive interneurons in mice exposed to chronic social defat stress
Relations
BioSample SAMN21415682
SRA SRX12162752

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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