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Sample GSM5589 Query DataSets for GSM5589
Status Public on Apr 05, 2003
Title Spleen vs Growth Hormone Release Hormone (GHRH) Treated B cell 240min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Growth Hormone Release Hormone (GHRH) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Growth Hormone Release Hormone (GHRH) for 240min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE382 Spleen vs GHRH Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.360084 23592.7 10296.6 59472.5 24148.5 60215 24732 4751.15 3849.86 738.975 902.169 739 898.5 26.3056 43.2105 0
2 -0.000298024 141.104 141.007 1029.58 1225.58 1007.5 1216 75.4221 68.4539 729.302 889.994 728 890 23.4158 44.7267 0
3 0.225556 14.3585 24.136 743.192 921.192 743 927 31.0045 58.1068 723.199 876.968 723 877.5 20.2511 38.1882 0
4 -0.0511442 68.2012 60.6245 861.357 1008.93 859 1003 31.5574 56.0694 723.25 877.455 723 879 19.8252 35.7784 0
5 0 18.6125 9.10527 715.458 886.417 713.5 886 13.7239 45.6098 722.694 888.159 722 885 23.8187 40.0451 0
6 -0.0531455 378.163 334.605 1539.57 1741.52 1552 1749 99.9228 96.1809 730.033 898.265 728 899 24.8176 39.6444 0
7 0.13835 14.9123 20.5066 739.48 920.92 734 922 26.3757 47.8974 718.66 887.333 718 885.5 20.9628 36.5639 0
8 0 10.2227 9.18006 717.28 883.88 716 885 15.263 35.9436 716.453 883.399 715 884.5 16.5494 31.9152 0
9 0.0837473 4344.4 5268.38 11519.5 12785.3 11515 12701 843.366 760.034 724.325 888.956 725 885 20.2166 39.7163 0.278202509
10 0.439308 592.727 1629.91 2059.21 4898.63 2061 4834.5 310.885 998.249 722.319 880.539 722 879 19.3359 38.2127 1.459349588
11 0 16.2692 7.92887 709.643 870.643 708 875 21.2572 28.6398 721.412 881.314 719 879 20.8199 34.8713 0
12 0 14.2999 9.98221 719.76 862.76 720 867 12.8461 38.4678 721.156 879.513 720 879 21.4378 37.4757 0
13 0 14.8523 9.99273 712.821 886.607 716.5 890 18.6668 28.47 717.913 881.494 719.5 882 21.8366 38.2527 0
14 0.276377 579.969 1095.93 2007.19 3625.33 2024 3477 219.208 498.858 719.981 889.594 718 890 22.3974 39.713 0.918104521
15 0.0111101 2114.82 2169.61 5794.68 5944.14 2991 2969.5 4771.44 4922.02 717.182 894.122 718 891.5 16.6815 36.9235 0
16 0.131903 1255.77 1701.43 3656.32 4946.21 3256 4381 1252.38 1781.36 720.4 888.8 719 886.5 22.0155 43.5097 0
17 -0.479082 872.862 289.643 2607.91 1606.04 2199 1522 805.839 273.782 718.387 885.045 717 886 21.8401 36.3617 0
18 0.0872381 403.634 493.43 1590.89 2149.96 1577 2152 72.749 74.9992 723.817 896.232 724.5 897 21.5871 36.7293 0.289798695
19 0.219916 3617.38 6002.2 9701.29 14469.3 10292 15009.5 1430.92 2014.51 720.81 901.215 719 897 22.0936 36.3849 0.730545139
20 -0.0183741 3643.44 3492.5 9682.24 8846.16 9620 8766 927.722 758.098 717.856 892.329 719 893.5 19.4415 33.3729 -0.061037439

Total number of rows: 16273

Table truncated, full table size 1974 Kbytes.




Supplementary data files not provided

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