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Sample GSM5592 Query DataSets for GSM5592
Status Public on Apr 05, 2003
Title Spleen vs Interferon-beta (IFN beta) Treated B cell 30min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Interferon-beta (IFN beta) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Interferon-beta (IFN beta) for 30min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE383 Spleen vs IFN beta Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.14846 41744 29657.5 65516.7 51963.3 65517 53363.5 0.77757 7911.11 611.796 648.911 612 650 15.302 31.3613 0
2 -0.0670344 287.112 246.047 1059.29 1052.18 1051.5 1027.5 62.9667 86.8882 637.689 643.888 619 643 46.2407 30.2409 0
3 0 51.0631 14.0096 652.25 643.393 641.5 636 33.9713 37.8078 651.364 639.485 630 640 53.3297 28.34 0
4 -0.149825 96.5337 68.3682 750.28 734.6 750 730 28.9043 33.6489 621.98 638.49 613 638 30.1027 28.4692 0
5 0.0730778 19.6303 23.2277 624.893 686.429 617 684 29.3792 43.9068 612.516 664.204 611 656 19.0776 47.2954 0
6 -0.0263947 739.15 695.565 1727.19 1895.54 1771.5 1916.5 133.34 149.148 620.104 688.825 620 685.5 17.304 36.8814 0
7 -0.357767 40.6413 17.832 651.346 692.192 634 692.5 55.9392 25.7698 613.013 684.177 613 684 16.0123 35.0133 0
8 0 16.192 15.8141 608.792 656.583 607.5 660 14.7176 20.2933 612.445 652.716 614 651 16.1479 42.6932 0
9 0.0375124 3842.05 4188.66 7256.4 7111.24 7383 7016 373.248 478.093 612.407 632.056 612 627.5 15.9804 32.5811 0.124613495
10 0.179056 401.018 605.649 1200.67 1707.54 1132.5 1507.5 193.195 529.302 612.737 646.455 611 645 17.6094 34.0194 0
11 0.152871 13.1768 18.7362 610.423 643.038 609.5 645 14.2665 34.3633 606.222 629.013 605 628 13.7253 25.0786 0
12 0 17.612 13.7516 611.682 628.955 613.5 625 12.9996 40.3549 609.759 644.386 609 640 17.3376 37.6101 0
13 0.00635744 14.1957 14.4051 607.111 629.852 603 634 16.7133 39.2072 605.741 625.133 607 624 14.9096 24.3528 0
14 0.0673169 960.35 1121.36 2089.89 2535.14 2128.5 2530.5 966.073 1303.38 606.568 626.019 605 625.5 15.4216 28.5129 0
15 0.0935139 3716.66 4609.63 7041 7753.18 6832.5 7111.5 5147.6 5798.51 609.459 624.83 610 621 15.3824 27.5125 0
16 0.166248 1637.76 2401.59 3310.82 4503.14 3587.5 4848 931.279 1285.46 610.619 628.288 609 627 16.5931 27.5762 0.552263902
17 -0.673752 1301.75 275.916 2548 1073.26 1492 861 1979.23 448.474 609.145 609.314 610 608 15.6888 29.1995 0
18 -0.010373 782.658 764.186 1785.38 1924.38 1794.5 1970.5 140.835 162.78 606.197 602.694 605 600 15.1782 24.9213 -0.03445836
19 0.107814 4366.51 5596.91 8197.5 9261.54 8487.5 9651 1113.24 1516.98 616.415 626.145 616 620 17.7291 52.9671 0.358150356
20 -0.221743 4879.99 2928.71 9044.89 5197.3 9797 4785 1871.21 1233.92 616.878 669.391 616.5 670 17.8887 35.217 -0.736614302

Total number of rows: 16273

Table truncated, full table size 1950 Kbytes.




Supplementary data files not provided

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