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Status |
Public on Sep 30, 2021 |
Title |
pDC_A |
Sample type |
SRA |
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Source name |
pDC
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Organism |
Homo sapiens |
Characteristics |
tissue: normal
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Extracted molecule |
polyA RNA |
Extraction protocol |
Arcturus PicoPure RNA Isolation Kit (Life Technologies) Ovation kit (Nugen, #0340) using 50 ng of input total RNA and 20 cycles of amplificaftion
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
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Data processing |
The raw FASTQ data were analyzed by the VIPER pipeline which combines STAR alignment and gene expression analysis such as unsupervised clustering, PCA based on Cufflinks and differential expression with DESEq2 Genome_build: hg19 Supplementary_files_format_and_content: RNA abundance expressed as fragments per kilobase of transcript per million mapped reads (FPKM)
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Submission date |
Sep 23, 2021 |
Last update date |
Sep 30, 2021 |
Contact name |
Andrew Lane |
E-mail(s) |
aalane@partners.org
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Phone |
617-632-4589
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Organization name |
Dana-Farber Cancer Institute
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Street address |
450 Brookline Ave
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City |
Boston |
State/province |
MA |
ZIP/Postal code |
02215 |
Country |
USA |
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Platform ID |
GPL16791 |
Series (2) |
GSE184656 |
Sex-biased ZRSR2 mutations in myeloid malignancies impair plasmacytoid dendritic cell activation and apoptosis [patients] |
GSE185983 |
Sex-biased ZRSR2 mutations in myeloid malignancies impair plasmacytoid dendritic cell activation and apoptosis |
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Relations |
BioSample |
SAMN21569091 |
SRA |
SRX12307658 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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