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Sample GSM5594641 Query DataSets for GSM5594641
Status Public on Sep 30, 2021
Title pDC_C
Sample type SRA
 
Source name pDC
Organism Homo sapiens
Characteristics tissue: normal
Extracted molecule polyA RNA
Extraction protocol Arcturus PicoPure RNA Isolation Kit (Life Technologies)
Ovation kit (Nugen, #0340) using 50 ng of input total RNA and 20 cycles of amplificaftion
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Data processing The raw FASTQ data were analyzed by the VIPER pipeline which combines STAR alignment and gene expression analysis such as unsupervised clustering, PCA based on Cufflinks and differential expression with DESEq2
Genome_build: hg19
Supplementary_files_format_and_content: RNA abundance expressed as fragments per kilobase of transcript per million mapped reads (FPKM)
 
Submission date Sep 23, 2021
Last update date Sep 30, 2021
Contact name Andrew Lane
E-mail(s) aalane@partners.org
Phone 617-632-4589
Organization name Dana-Farber Cancer Institute
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL16791
Series (2)
GSE184656 Sex-biased ZRSR2 mutations in myeloid malignancies impair plasmacytoid dendritic cell activation and apoptosis [patients]
GSE185983 Sex-biased ZRSR2 mutations in myeloid malignancies impair plasmacytoid dendritic cell activation and apoptosis
Relations
BioSample SAMN21569094
SRA SRX12307660

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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