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Sample GSM5595 Query DataSets for GSM5595
Status Public on Apr 05, 2003
Title Spleen vs Interferon-beta (IFN beta) Treated B cell 60min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Interferon-beta (IFN beta) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Interferon-beta (IFN beta) for 60min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE383 Spleen vs IFN beta Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.304903 37363.3 18515.8 61257.8 32466.6 64877 31872 5695.16 8264.5 759.796 959.827 756 958.5 25.2965 39.0188 0
2 -0.168656 229.713 155.786 1105.63 1203.67 1109 1194 81.4589 89.5678 790.685 945.012 775.5 941.5 52.0803 41.8244 0
3 0 44.8953 20.4784 811.926 951.593 806 945 45.214 40.5228 801.503 945.522 783 946 59.5625 42.5903 0
4 0 44.9781 26.6762 852.037 975.259 840 967 50.0841 51.498 820.449 954.904 832 953 61.1863 51.7949 0
5 -0.158533 28.8413 20.0208 771.586 941.966 762 934 30.3262 39.7936 756.062 941.123 754.5 939.5 26.8466 41.6355 0
6 -0.139789 594.785 431.093 1656 1695.04 1680 1690 121.489 113.278 777.373 943.893 778 936 27.2033 43.7916 0
7 -0.369471 45.0113 19.2243 825.179 931.25 800.5 928.5 69.8422 29.9921 787.412 931.941 786 932 24.5431 39.4584 0
8 0 20.3059 19.3765 778.64 937.16 778 939 24.2537 38.9505 785.28 932.414 784 929 26.2783 41.3129 0
9 0.0106329 3379.37 3463.13 6442.54 6596.54 6369 6539 524.064 587.812 791.401 939.006 790 940 26.6383 38.5918 0.035321729
10 -0.0106037 344.232 335.929 1284.78 1535.87 1278 1473 119.937 301.37 791.664 951.103 791 944 24.7245 42.6764 0
11 -0.0256348 22.8169 21.5091 794 956.038 793 959 19.998 36.417 786.447 945.093 787 943 23.9867 33.0435 0
12 0.018198 23.3883 24.3891 789.833 967.667 787.5 973.5 16.4493 37.8793 781.372 950.98 780.5 952 22.2311 32.018 0
13 0 18.1752 16.6749 774.56 967.48 774 966 13.2322 36.798 787.05 970.099 789 973 22.9964 36.3637 0
14 0.0626813 818.587 945.684 2014.14 2631.55 1507 1793 940.648 1352.04 779.63 966.377 780 968 22.6351 37.662 0
15 -0.0736183 3599.77 3038.48 6790 5930.21 6675 5911.5 4332.38 3709.9 778.752 962.318 779 964 21.807 35.0514 0
16 0.202161 1837.19 2926.28 3766.29 5879.14 3898 6413 1127.7 1829.19 784.408 975.841 779 969 26.7073 37.4501 0.671564306
17 -0.532579 934.128 274.048 2174.04 1427.74 1597 1262 1402.99 465.365 781.181 962.519 779 960 22.3725 37.3383 0
18 -0.0143367 767.289 742.373 1919.29 2247 1985 2304 246.104 240.157 769.481 940.353 769 939 22.2184 41.0962 -0.047625487
19 0.187814 4814.11 7418.74 8908.38 12906.7 9344.5 13494 1132.59 1850.45 752.127 892.006 750 887 22.218 39.1991 0.623904603
20 -0.215093 4862.81 2963.42 8966.88 5683.46 8951.5 5696.5 703.971 397.985 788.844 868.669 791.5 867.5 33.6517 32.8541 -0.71452348

Total number of rows: 16273

Table truncated, full table size 1968 Kbytes.




Supplementary data files not provided

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