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Sample GSM5610 Query DataSets for GSM5610
Status Public on Apr 05, 2003
Title Spleen vs Interferon-gamma (IFN gamma) Treated B cell 120min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Interferon-gamma (IFN gamma) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Interferon-gamma (IFN gamma) for 120min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE384 Spleen vs IFN gamma Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.140803 30665.6 22174.2 65516.8 53590.5 65517 54816.5 0.795006 8410.93 1057.01 1491.23 1045 1488 66.3099 91.1017 0
2 -0.0285522 177.07 165.803 1345 1794.93 1311.5 1784.5 113.396 138.328 1039.02 1455.19 1035 1455 54.6448 89.0616 0
3 0.172528 44.0689 65.5632 1057.68 1503 1055.5 1519.5 74.0891 103.766 1021.21 1406.09 1014.5 1415 56.6797 89.0311 0
4 -0.0930787 88.1583 71.1515 1148.59 1504.67 1146 1506 81.9682 55.9629 1022.57 1396.74 1019 1398 63.1953 75.948 0
5 0.0284986 56.6423 60.4839 1102.04 1499.27 1087.5 1501.5 82.0207 93.3319 1040.47 1415.73 1032 1404.5 71.8836 85.9371 0
6 -0.0257851 473.624 446.322 1918.07 2400.48 1910 2435 146.905 180.419 1021.48 1363.7 1009 1358 60.2374 78.2437 0
7 0.0172879 46.0044 47.8726 1052.04 1413.88 1043 1416 96.3907 95.5097 1012.3 1360.86 1010.5 1358.5 60.708 80.2249 0
8 0 36.3614 29.4218 985.174 1323.87 982 1319 44.9178 70.3112 1010.91 1352.08 1005 1344 66.8545 79.1969 0
9 0.125594 3451.29 4608.67 8579.72 11580.8 8671 11555 545.004 1034.43 1001.63 1329.48 998 1322 60.379 89.1643 0.417214237
10 0.298171 743.933 1478.1 2495.54 4853.46 2427.5 4780.5 386.782 930.321 1015.48 1365.13 1013 1363 67.1288 98.2397 0.990502622
11 0 33.183 32.8942 1006.04 1374.92 1008 1380 75.6912 97.0628 998.083 1365 992 1359 63.4629 85.1225 0
12 0 32.503 32.8983 1017.04 1383.56 1017 1386 58.3692 99.8084 1021.73 1389 1026 1386 61.454 86.1144 0
13 0.0868406 35.2581 43.0626 1053.72 1475.4 1032 1485 77.314 90.8712 1035.52 1433.67 1037 1431 48.7525 89.123 0
14 0.219069 609.101 1008.69 2215.36 3845.86 2206 3791.5 78.767 279.407 1032.37 1448.19 1029 1443 71.3073 100.789 0.727731466
15 0.104783 2907.08 3700.33 7386.85 9677.92 3634 4760.5 6232.33 8145.93 1020.81 1448.61 1013 1441.5 69.936 101.189 0
16 0.243146 1383.29 2421.35 3952.73 6955.96 3704.5 6205 1031.98 1850.76 1023 1461.25 1013 1462.5 61.3444 96.6134 0.807713529
17 -0.376723 377.781 158.678 1733.26 1820.05 1601 1800 431.534 203.401 1026.42 1496.48 1028 1491 68.42 104.427 0
18 0.165721 443.334 649.309 1864.64 3071.68 1862.5 3099.5 120.53 216.585 1027.63 1534 1028 1522 71.7547 111.304 0.550513246
19 0.21058 3327.57 5403.89 8341.21 13607.9 8457 13498.5 877.063 1428.88 1035.92 1576.98 1033.5 1567.5 68.461 111.009 0.699531618
20 0.0197106 4735.7 4955.58 11478 12631.6 11164.5 12415 1117.45 1319.25 1059.19 1605.46 1046.5 1604.5 80.2927 112.215 0.065477196

Total number of rows: 16273

Table truncated, full table size 1996 Kbytes.




Supplementary data files not provided
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