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Sample GSM5625 Query DataSets for GSM5625
Status Public on Apr 05, 2003
Title Spleen vs Insulin-like growth factor 1 Treated B cell 240min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Insulin-like growth factor 1 Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Insulin-like growth factor 1 for 240min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE385 Spleen vs Insulin-like growth factor 1 gamma Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0199936 36949.2 35286.7 65516.7 65517 65517 65517 0.603834 0.598717 814.73 1061.79 809 1056 61.6273 88.6996 0
2 -0.542744 141.105 40.4387 972.28 1052.36 967 1032 77.5288 89.835 787.806 1039.7 782 1034 48.1752 80.7697 0
3 -0.134667 42.584 31.2306 827.571 1051.68 819 1057 53.0321 69.5536 812.868 1105.75 805 1099 53.9067 75.3189 0
4 -0.556574 105.657 29.3308 874.52 963.52 879 961 54.9432 60.2904 783.335 1025.92 780 1020 41.7703 74.6232 0
5 -0.201508 46.9912 29.5466 811.042 984.542 804.5 988.5 48.4539 75.6146 788.799 1034.83 778 1037 51.5809 69.3856 0
6 -0.303692 301.997 150.076 1307.2 1374.6 1337 1394 127.477 107.441 848.354 1148.8 848 1139 67.1306 105.088 0
7 0 61.1586 38.9429 905 1252.23 922.5 1249 74.1016 122.607 904.329 1321.39 901 1315.5 58.581 130.258 0
8 0 55.8605 51.9345 864.524 1298.81 862 1293 40.4705 53.6914 903.429 1339.61 899 1331 65.0942 142.788 0
9 0.146792 3759.08 5270.77 7620.74 10306.2 7632 10215 345.854 535.948 813.856 1101.73 808.5 1111 62.4473 85.1761 0.487632469
10 0.443051 1024.5 2841.61 2573.72 6152.52 2528 6049 604.55 1828.67 800.099 1079.16 801.5 1075.5 42.2441 69.942 1.471783564
11 0 44.3825 49.4113 818.917 1170.83 819 1143 53.6583 79.6354 832.841 1153.21 818 1134 63.9573 109.855 0
12 0.281691 62.0404 118.677 886.444 1343.22 887 1347 55.7545 99.0382 827.488 1173.46 824 1159 51.6207 88.5916 0
13 0 34.1667 37.2225 773.038 1002.15 759 980 54.1572 77.4166 766.039 988.836 755.5 990 50.6341 80.471 0
14 0.228636 719.766 1218.5 1911.19 3112.96 1898 3115.5 167.27 295.519 731.115 877.622 727.5 878 40.5978 68.3188 0.759512352
15 -0.0141784 1757.76 1701.31 3802.07 3861.39 1560.5 1663.5 3855.41 3711.72 726.519 852.175 724.5 854.5 36.8694 67.2398 0
16 0.105469 1511.13 1926.51 3347.77 4226.92 2631.5 3106 1387.85 2072.21 711.804 808.034 702 798 49.2682 67.6527 0
17 -0.700764 981.54 195.498 2254.77 1097.5 2128.5 1098.5 571.407 127.259 695.759 777.667 696 769 32.7683 60.341 -2.327887619
18 0.235093 258.855 444.785 1088.45 1618.82 1076.5 1623 48.179 82.7484 707.448 810.708 704 809 31.1566 52.9865 0.780962042
19 0.15141 4240.49 6009.32 8410.6 11291.6 8140 11534 1680.77 2298 717.799 800.389 713 803 33.4611 54.0537 0.502973133
20 -0.135623 4127.84 3020.65 8162.46 6014.62 8132.5 5945.5 762.677 571.812 700.322 755.248 696 749 35.546 55.1955 -0.450529854

Total number of rows: 16273

Table truncated, full table size 1975 Kbytes.




Supplementary data files not provided
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