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Sample GSM5635 Query DataSets for GSM5635
Status Public on Apr 05, 2003
Title Spleen vs IL10 Treated B cell 60min (set2)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name IL10 Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with IL10 for 60min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE387 Spleen vs IL10 Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 0.00242081 50369.5 50651.1 62568.8 57842 63402.5 57431.5 3071.06 6061.24 558.532 904.552 557 902 18.3015 44.9094 0
2 -0.530684 104.196 30.702 619.48 859.52 618 855 17.0125 43.6626 547.634 881.261 546 881 21.1405 51.8598 0
3 0.113766 33.1059 43.02 554.269 906 555.5 915.5 25.554 51.8498 539.318 873.758 538 876 18.9595 48.5059 0
4 -1.08823 130.649 10.6629 566.12 820.44 568 817 17.572 47.0851 534.181 859.604 534 860 17.0619 42.3771 0
5 0 25.063 23.2124 539.654 858.5 539 867.5 12.7403 41.6838 536.877 859.503 533 861 18.6757 43.1476 0
6 -0.239807 270.001 155.439 831.75 993.821 828.5 976.5 52.6411 64.7548 534.789 843.503 532 842 16.9723 48.724 0
7 -0.158813 38.2655 26.5457 546.448 838.379 551 847 23.3874 39.2459 530.724 850.105 527.5 849 17.5277 47.9879 0
8 0 31.7488 29.0389 533.583 835.167 528.5 838 22.8491 61.8523 539.065 845.435 537 846.5 20.8943 61.1169 0
9 0.220935 3230.09 5372.16 4999.86 6172.18 4975.5 6176.5 307.601 409.173 540.987 835.045 540 834 17.0805 44.7721 0.733930184
10 0.283879 989.755 1902.86 1810.73 2848.08 1605.5 2439 601.192 1117.18 541.523 851.387 541 854 19.1166 47.1616 0
11 0 22.387 25.2807 538.833 874.5 536.5 871 12.737 55.6667 537.158 868.809 535 867 16.8908 46.4105 0
12 0 25.9215 23.5712 545.56 884.84 544 887 14.7453 33.5071 544.829 881.947 543 879.5 19.2436 43.9781 0
13 0 31.9093 30.1659 551.36 889.16 547 887 12.652 49.3218 546.967 914.52 543.5 910 20.8906 63.8211 0
14 0.317393 661.037 1372.84 1351.04 2348.57 1342 2365 128.235 283.179 536.982 866.707 535 866.5 16.0059 49.6707 1.054356724
15 0.0543305 1511.83 1713.31 2510.14 2597.39 954.5 1112 2542.79 2423.37 535.051 830.186 532 834 17.9863 51.3587 0
16 0.285249 1676.34 3233.03 2784.96 4088.65 2019 2872.5 1420.17 2093.38 531.397 814.429 529 806 17.1313 48.4948 0
17 -0.533326 1213.14 355.29 1983.48 1162.43 1555 1080 986.618 271.511 525.253 793.679 523 792 18.3168 45.6663 0
18 0.357598 252.131 574.413 815.885 1419.38 817.5 1425.5 40.5801 76.2486 528.147 790.538 526 788 16.2999 45.1168 1.187914843
19 0.388289 4830.84 11811.7 7198.85 12561.1 7133.5 12694.5 1094.13 1808.94 523.139 782.901 522 783 14.3378 41.1745 1.289868138
20 -0.0216553 4405.11 4190.84 6609.57 4922.82 6503.5 4912.5 664.3 423.323 520.975 769.313 518 769 13.6984 37.9283 -0.071937349

Total number of rows: 16273

Table truncated, full table size 1952 Kbytes.




Supplementary data files not provided

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