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Sample GSM5646 Query DataSets for GSM5646
Status Public on Apr 05, 2003
Title Spleen vs IL10 Treated B cell 240min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name IL10 Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with IL10 for 240min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE387 Spleen vs IL10 Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.483056 37554 12348.1 65461 19295.4 65517 16728.5 274.343 7369.71 712 891.776 696 884 62.8048 54.8894 0
2 0.00415331 43.5977 44.0166 706.875 881.5 705.5 889.5 35.1411 47.3341 661.845 865.316 661 868 21.5003 39.1833 0
3 0 99.5706 2.60279 644.731 809.808 643.5 810.5 14.4929 38.425 658.192 868.464 657 871 18.0893 36.9787 0
4 0 20.3668 19.8659 663.444 835.63 663 832 16.5653 52.9115 653.888 852.714 653 852 16.6497 37.358 0
5 0 37.2425 7.98858 654.24 793.32 658 798 20.9668 30.9054 656.234 840.63 656 840 18.9439 40.5361 0
6 0 154.91 3.25821 422.045 344.955 389 301.5 93.649 125.542 664.528 854.78 664 858 28.143 46.2905 0
7 0 40.7789 10.5714 677.417 843.375 662 845 40.5 40.1538 672.115 909.669 669.5 916 21.1413 52.6306 0
8 0 105.703 6.06284 676.5 925.808 674 927 15.774 31.6026 684.067 919.479 684 921 19.2034 47.614 0
9 0.162536 1893.98 2753.67 4130.46 4711.54 4137 4676 146.715 223.231 687.085 889.424 686 892 18.5201 39.1768 0.539932905
10 0.370813 422.234 991.668 1403.42 2294.5 1354 2098.5 264.592 702.677 671.536 910.791 670 914 20.6251 43.5228 1.231814123
11 0 25.8929 23.7348 664.4 939.16 662 940 15.2534 33.2449 664.592 932.166 664 937 18.2742 46.1618 0
12 0.12539 20.6518 27.5643 673.429 960.786 674.5 965 23.9265 40.1556 670.813 949.481 670 950 16.1261 36.3186 0
13 0 32.9026 20.1621 673.32 961.36 673 968 16.0928 44.7501 677.236 950.491 677 954 18.883 42.4313 0
14 0.31661 376.496 780.496 1316.19 2037.48 1325 1999 124.177 230.916 672.298 951.242 673 950 19.21 33.2888 1.051755654
15 0.0816485 1210.24 1460.56 2867 2950.79 1333.5 1436 2655.6 2538.79 675.224 955.199 674 954 16.2074 44.0688 0
16 0.155842 1405.36 2012 3231.96 3742.04 2429.5 2756.5 1599.16 1854.41 677.013 972.656 677 973 18.2662 40.8477 0
17 -0.504617 178.872 55.9661 950.217 960.609 937 955 93.4383 32.4174 667.553 951.082 667 954 17.7837 41.6829 0
18 0.425705 224.206 597.519 1042.35 1782.77 1044 1790 49.887 116.363 669.836 950.415 668 951 16.4104 41.4575 1.4141614
19 0.161494 2763.71 4008.54 5678.43 6582.25 5869.5 6729 848.182 966.703 673.41 956.392 672.5 955.5 19.6386 36.6862 0.536471456
20 -0.0456553 4412.28 3971.98 8663.61 6531.54 8579.5 6429 1098.33 888.268 676.52 952.493 675 947 21.3923 39.2102 -0.151663624

Total number of rows: 16273

Table truncated, full table size 1964 Kbytes.




Supplementary data files not provided

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