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Sample GSM5649 Query DataSets for GSM5649
Status Public on Apr 05, 2003
Title Spleen vs Lysophosphatidic Acid Treated B cell 30min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Lysophosphatidic Acid Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Lysophosphatidic Acid for 30min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE388 Spleen vs Lysophosphatidic Acid Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.382429 42510.1 17622.4 58748.5 26822.5 61070.5 22966.5 6636.45 9577 741.994 846.638 740 848 30.4545 57.673 0
2 -0.327445 66.8925 31.4726 787.143 838.25 786.5 844.5 31.085 62.0081 731.396 852.748 727 845 33.5214 63.4416 0
3 0 33.8832 26.5099 713.63 847.444 711 852 41.1182 48.7232 714.903 854.292 713 854 30.5445 59.2318 0
4 0 43.2262 20.1857 713.56 757.24 710 762 31.1182 41.2717 705.929 833.435 703 822.5 28.1797 62.3663 0
5 0 32.9552 24.0313 709.077 804.962 710.5 792.5 28.3731 63.8282 705.083 824.135 697.5 824 29.1563 54.7094 0
6 -0.422357 234.65 88.7286 985.571 933.179 989 927 50.1682 72.8377 710.435 817.857 704.5 812.5 29.751 61.5407 0
7 0 47.1441 19.0244 687.762 755.667 685 753 26.5441 50.8167 696.044 816.538 694.5 811 30.7338 58.7784 0
8 0 32.186 23.6995 686.667 797.792 679 790.5 29.3963 50.2169 691.416 820.081 687 821 26.3067 58.403 0
9 0.259854 2747.86 4998.61 4651.18 7762.75 4698 7697.5 232.918 472.534 697.128 816.756 693 816 29.6367 62.9869 0.863216303
10 0.388999 1106.66 2710.29 2244.27 4649.58 2218 4683 528.164 1429.58 688.34 825.531 687 816 24.1447 68.1591 1.292226707
11 0 42.6332 19.618 696.286 786.786 696 788 37.453 63.9081 693.787 838.735 694 837 27.7931 60.6123 0
12 0 29.691 27.0925 699.292 866.417 695 870 28.3203 65.845 691.421 842.742 689 839 29.5321 53.9516 0
13 0.156655 26.9064 38.5931 706.778 894.852 707 881 38.5909 60.8698 696.375 850.144 692.5 852 27.5575 61.3068 0
14 0.369204 545.717 1276.94 1417.39 2724.32 1395 2726.5 147.531 373.469 699.21 830.907 694.5 830 30.3269 51.5201 1.22646914
15 0.219429 2070.22 3431.19 3668.38 5617.12 1557 2094.5 3374.02 5572.86 704.322 839.401 700.5 841 27.6658 56.1176 0
16 0.188454 1887.01 2912.25 3397.46 4901.77 2667 3885 1620.29 2336.44 705.145 838.605 703 836.5 29.8101 66.1684 0
17 -0.909609 792.772 97.6201 1681.18 952.818 1537.5 958.5 514.639 63.3348 700.019 826.913 700 819.5 26.3586 60.0809 0
18 0.0926729 178.248 220.646 911.4 1160.32 910 1128 33.9448 68.0825 702.335 831.69 702 828 25.8179 56.6316 0.30785271
19 0.512507 4444.68 14466 7114.4 20965.4 7160 20468 1653.48 4154.81 702.611 833.688 700 828 26.3022 59.7515 1.702511402
20 -0.158619 7775.5 5396.47 11935 8299.04 11425.5 8166.5 1628.95 1091.31 698.292 816.364 695.5 819.5 26.7269 58.1327 -0.526920912

Total number of rows: 16273

Table truncated, full table size 1962 Kbytes.




Supplementary data files not provided

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