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Sample GSM565379 Query DataSets for GSM565379
Status Public on Jul 13, 2010
Title Neutrophil-Resting-2 [HG-U133A]
Sample type RNA
 
Source name Neutrophils from PBMC
Organism Homo sapiens
Characteristics tissue: peripheral blood
cell type: Neutrophils
treatment agent: NA
time post-treatment: NA
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen)
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol cRNA was hybridized on GeneChip HGU133A.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Description Gene expression data from resting neutrophils from peripheral blood
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 12, 2010
Last update date Sep 01, 2016
Contact name Alex Abbas
E-mail(s) abbas@gene.com
Organization name Genentech, Inc.
Department Bioinformatics
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL96
Series (1)
GSE22886 Expression profiles from a variety of resting and activated human immune cells
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
1007_s_at 620.731
1053_at 312.948
117_at 2632.219
121_at 2054.946
1255_g_at 192.131
1294_at 389.947
1316_at 445.675
1320_at 38.792
1405_i_at 185.621
1431_at 144.263
1438_at 38.945
1487_at 1025.155
1494_f_at 613.76
1598_g_at 868.345
160020_at 981.913
1729_at 1160.513
1773_at 63.287
177_at 292.926
179_at 1392.017
1861_at 468.745

Total number of rows: 22283

Table truncated, full table size 406 Kbytes.




Supplementary file Size Download File type/resource
GSM565379.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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