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Sample GSM566493 Query DataSets for GSM566493
Status Public on Aug 12, 2014
Title Kainate-induced status epilepticus, NRSE ODN,15B
Sample type RNA
 
Source name Rat CA1 hippocampus
Organism Rattus norvegicus
Characteristics injection: Kainate
odn: NRSE
Treatment protocol Rats were injected with either saline or Kainate (to induce status epilepticus), 3 hours after status epilepticus was abrogated oligodeoxynucleotides (Scrambled or hcn1 NRSE sequence) were infused ICV
Extracted molecule total RNA
Extraction protocol RNA was extracted with array grade total RNA isolation kit from SABiosciences. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description male adult rats
Data processing The data were normalised using Genomestudio across Illumina standards
 
Submission date Jul 14, 2010
Last update date Aug 12, 2014
Contact name Shawn McClelland
E-mail(s) shawn.mek@gmail.com
Phone 818-400-4975
Organization name UC Irvine
Department Anatomy & Neurobiology
Lab Baram
Street address 19182 Jamboree
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL6101
Series (2)
GSE22897 NRSF mediated epigenetic mechanisms of ion channel dysfunction in experimental temporal lobe epilepsy [Kainate, NRSE ODNs vs. Kainate, scrambled ODNs]
GSE22899 NRSF mediated epigenetic mechanisms of ion channel dysfunction in experimental temporal lobe epilepsy

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1369537 170.1567 0.002424242
ILMN_1358051 141.4276 0.01212121
ILMN_1361746 97.17076 0.9781818
ILMN_1351370 119.2988 0.249697
ILMN_1357910 99.0361 0.9612121
ILMN_1352975 3329.256 0
ILMN_1368384 183.769 0.002424242
ILMN_1355285 135.3952 0.03272727
ILMN_1376898 120.4107 0.2266667
ILMN_1368325 228.0552 0.001212121
ILMN_1353563 499.2418 0
ILMN_1348794 106.2622 0.7636364
ILMN_1364273 243.6984 0
ILMN_1369433 252.5617 0
ILMN_1349007 217.8336 0.001212121
ILMN_1374156 122.112 0.1842424
ILMN_1360232 162.0193 0.002424242
ILMN_1355155 2089.275 0
ILMN_1362563 125.6728 0.12
ILMN_1355815 118.9933 0.2569697

Total number of rows: 22523

Table truncated, full table size 659 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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