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Sample GSM566589 Query DataSets for GSM566589
Status Public on Oct 01, 2011
Title IDFP6
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics strain: Swiss-Webster
age: 7 weeks
gender: Male
tissue: Liver
treatment: isopropoyl dodecyl fluorophosphonate (IDFP) (10 mg/kg, i.p.)
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit including DNase I treatment in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 6
Data processing The data were normalised using quantile normalisation with background substraction in Beadstudio 3.2
 
Submission date Jul 15, 2010
Last update date Oct 01, 2011
Contact name Max Ruby
E-mail(s) mruby@chori.org
Organization name Children's Hospital Oakland Reserach Institue
Lab Krauss
Street address 5700 Martin Luther King Jr. Way
City OAKLAND
State/province CA
ZIP/Postal code 94609
Country USA
 
Platform ID GPL6885
Series (1)
GSE22949 Cannabinoid Receptor 1 Dependent Effects of Isopropoyl dodeycl fluorophosphonate on Hepatic Gene Expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1879.101 0
ILMN_2721178 452.5947 0
ILMN_3033922 1245.87 0
ILMN_3092673 7018.846 0
ILMN_2816356 22.82503 0.06766918
ILMN_2808939 1360.003 0
ILMN_2634564 563.3501 0
ILMN_2737647 18.40952 0.1015038
ILMN_2734484 681.5025 0
ILMN_2952292 84.55716 0.001253133
ILMN_2699078 -16.03732 0.9273183
ILMN_1213681 116.0347 0
ILMN_2735413 452.7587 0
ILMN_2735415 442.9071 0
ILMN_2891688 841.1368 0
ILMN_2637698 564.0453 0
ILMN_2674228 114.646 0
ILMN_2601546 19.2411 0.0952381
ILMN_1230831 24.91744 0.05764411
ILMN_2848071 789.2576 0

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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