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Sample GSM566597 Query DataSets for GSM566597
Status Public on Oct 01, 2011
Title Am251/IDFP3
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics strain: Swiss-Webster
age: 7 weeks
gender: Male
tissue: Liver
pretreatment: cannabinoid receptor 1 antagonist (AM251) (10 mg/kg, i.p.)
treatment: isopropoyl dodecyl fluorophosphonate (IDFP) (10 mg/kg, i.p.)
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit including DNase I treatment in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with background substraction in Beadstudio 3.2
 
Submission date Jul 15, 2010
Last update date Oct 01, 2011
Contact name Max Ruby
E-mail(s) mruby@chori.org
Organization name Children's Hospital Oakland Reserach Institue
Lab Krauss
Street address 5700 Martin Luther King Jr. Way
City OAKLAND
State/province CA
ZIP/Postal code 94609
Country USA
 
Platform ID GPL6885
Series (1)
GSE22949 Cannabinoid Receptor 1 Dependent Effects of Isopropoyl dodeycl fluorophosphonate on Hepatic Gene Expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1908.618 0
ILMN_2721178 480.5663 0
ILMN_3033922 1191.046 0
ILMN_3092673 6122.772 0
ILMN_2816356 32.48793 0.03132832
ILMN_2808939 904.8372 0
ILMN_2634564 579.8629 0
ILMN_2737647 -4.048228 0.5388471
ILMN_2734484 774.5721 0
ILMN_2952292 89.28853 0.001253133
ILMN_2699078 -13.98379 0.8746867
ILMN_1213681 140.1875 0
ILMN_2735413 489.5469 0
ILMN_2735415 567.8607 0
ILMN_2891688 597.0203 0
ILMN_2637698 633.9658 0
ILMN_2674228 154.5801 0
ILMN_2601546 25.31372 0.05137845
ILMN_1230831 -3.236933 0.5
ILMN_2848071 919.4395 0

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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