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Sample GSM567916 Query DataSets for GSM567916
Status Public on Jul 20, 2010
Title Prostate cancer 35 Normal tissue
Sample type RNA
 
Source name Prostate cancer radical prostatectomy specimen 35
Organism Homo sapiens
Characteristics specimen: 35
disease state: normal control
Treatment protocol Primary prostate cancer samples from thus far untreated patients after radical prostatectomy.
Extracted molecule total RNA
Extraction protocol RNA was prepared by proteinase K digestion of formalin-fixed tissue samples followed by RNA precipitation. Epicentre MasterPure Complete DNA & RNA Purification Kit was used according to the manufacturer's instructions
Label biotin
Label protocol FlashTag RNA Labeling with Genisphere RNA Labeling Kit
 
Hybridization protocol Affymetrix GeneChip miRNA Procedure (FluidicsScript 450-0003, Hyb. 48°C)
Scan protocol Affymetrix-3000 7G
Description MiRNA gene expression data from corresponding normal tissue
Normal * 35
Total RNA from FFPE tissue
Data processing Data files were analyzed with Partek genomics suite (version 6.5) using RMA background correction and quartile normalization
 
Submission date Jul 20, 2010
Last update date Jul 22, 2010
Contact name Sven Wach
E-mail(s) sven.wach@uk-erlangen.de
Organization name University Hospital, Friedrich-Alexander-University Erlangen-Nuernberg
Department Dept. of Urology
Lab Experimental Urology
Street address Glueckstrasse 6
City Erlangen
ZIP/Postal code 91054
Country Germany
 
Platform ID GPL8786
Series (1)
GSE23022 MicroRNA expression data from human prostate cancer

Data table header descriptions
ID_REF
VALUE Log2 transformed signal intensity

Data table
ID_REF VALUE
14q-0_st 1.02843
14qI-1_st 1.12903
14qI-2_st 1.19561
14qI-3_x_st 1.4736
14qI-4_st 1.07259
14qI-4_x_st 0.797635
14qI-5_st 1.2798
14qI-6_st 1.08964
14qI-6_x_st 0.835864
14qI-7_st 1.70048
14qI-8_st 1.82835
14qI-8_x_st 0.942473
14qI-9_x_st 1.07351
14qII-10_st 0.708088
14qII-11_st 1.16901
14qII-11_x_st 1.3951
14qII-12_st 1.22166
14qII-12_x_st 1.21205
14qII-13_st 0.96307
14qII-14_st 2.66261

Total number of rows: 7815

Table truncated, full table size 184 Kbytes.




Supplementary file Size Download File type/resource
GSM567916.CEL.gz 136.6 Kb (ftp)(http) CEL
Processed data included within Sample table

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