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Sample GSM567925 Query DataSets for GSM567925
Status Public on Jul 20, 2010
Title Prostate cancer 7 Tumor tissue
Sample type RNA
 
Source name Prostate cancer radical prostatectomy specimen 7
Organism Homo sapiens
Characteristics specimen: 7
disease state: Primary prostate cancer
tumor stage: pT3a
gleason score: 7
Treatment protocol Primary prostate cancer samples from thus far untreated patients after radical prostatectomy.
Extracted molecule total RNA
Extraction protocol RNA was prepared by proteinase K digestion of formalin-fixed tissue samples followed by RNA precipitation. Epicentre MasterPure Complete DNA & RNA Purification Kit was used according to the manufacturer's instructions
Label biotin
Label protocol FlashTag RNA Labeling with Genisphere RNA Labeling Kit
 
Hybridization protocol Affymetrix GeneChip miRNA Procedure (FluidicsScript 450-0003, Hyb. 48°C)
Scan protocol Affymetrix-3000 7G
Description MiRNA gene expression from prostate cancer tissue
Tumor * 7
Total RNA from FFPE tissue
Data processing Data files were analyzed with Partek genomics suite (version 6.5) using RMA background correction and quartile normalization
 
Submission date Jul 20, 2010
Last update date Jul 22, 2010
Contact name Sven Wach
E-mail(s) sven.wach@uk-erlangen.de
Organization name University Hospital, Friedrich-Alexander-University Erlangen-Nuernberg
Department Dept. of Urology
Lab Experimental Urology
Street address Glueckstrasse 6
City Erlangen
ZIP/Postal code 91054
Country Germany
 
Platform ID GPL8786
Series (1)
GSE23022 MicroRNA expression data from human prostate cancer

Data table header descriptions
ID_REF
VALUE Log2 transformed signal intensity

Data table
ID_REF VALUE
14q-0_st 1.18215
14qI-1_st 1.09563
14qI-2_st 0.966849
14qI-3_x_st 0.833634
14qI-4_st 1.26666
14qI-4_x_st 1.05942
14qI-5_st 1.25293
14qI-6_st 0.693878
14qI-6_x_st 0.886905
14qI-7_st 0.808647
14qI-8_st 0.884222
14qI-8_x_st 1.06377
14qI-9_x_st 0.803637
14qII-10_st 0.899545
14qII-11_st 0.990567
14qII-11_x_st 0.880718
14qII-12_st 1.18619
14qII-12_x_st 1.20093
14qII-13_st 0.913947
14qII-14_st 1.28725

Total number of rows: 7815

Table truncated, full table size 184 Kbytes.




Supplementary file Size Download File type/resource
GSM567925.CEL.gz 128.4 Kb (ftp)(http) CEL
Processed data included within Sample table

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