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Sample GSM573540 Query DataSets for GSM573540
Status Public on Aug 01, 2011
Title ND_TREATMENT
Sample type RNA
 
Source name Canine Spontaneous Sarcoma
Organism Canis lupus familiaris
Characteristics cell type: Sarcoma tumor
treatment: hyperthermia
Treatment protocol Tissue used for gene expression analysis was placed immediately into RNAlater before RNA isolation
Growth protocol Spontaneous Tumors from Dogs
Extracted molecule total RNA
Extraction protocol RNAs were extracted with Qiagen RNA easy mini
Label biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description none
Data processing Expression Console (Affymetrix) was used to generate the RMA file
 
Submission date Aug 02, 2010
Last update date Aug 01, 2011
Contact name Jen-Tsan Chi
E-mail(s) jentsan.chi@duke.edu
Phone 919-668-4759
Organization name Duke University
Department Molecular Genetics and Microbiology
Street address 101 Science Drive, DUMC 3382
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL3738
Series (1)
GSE23380 The gene expression response of spontaneous canine sarcomas to thermoradiotherapy – response heterogeneity and combination therapeutics

Data table header descriptions
ID_REF
VALUE RMA normalized data

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.110007
AFFX-BioB-M_at 8.712418
AFFX-BioB-3_at 7.961433
AFFX-BioC-5_at 8.844063
AFFX-BioC-3_at 9.249427
AFFX-BioDn-5_at 11.0225
AFFX-BioDn-3_at 12.30797
AFFX-CreX-5_at 13.11485
AFFX-CreX-3_at 13.47757
AFFX-DapX-5_at 2.949894
AFFX-DapX-M_at 3.470353
AFFX-DapX-3_at 3.245054
AFFX-LysX-5_at 2.881551
AFFX-LysX-M_at 3.553712
AFFX-LysX-3_at 4.450633
AFFX-PheX-5_at 3.185798
AFFX-PheX-M_at 2.961569
AFFX-PheX-3_at 5.176403
AFFX-ThrX-5_at 3.660237
AFFX-ThrX-M_at 3.130985

Total number of rows: 43035

Table truncated, full table size 1230 Kbytes.




Supplementary file Size Download File type/resource
GSM573540.CEL.gz 5.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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