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Sample GSM573541 Query DataSets for GSM573541
Status Public on Aug 01, 2011
Title DC_BASE
Sample type RNA
 
Source name Canine Spontaneous Sarcoma
Organism Canis lupus familiaris
Characteristics cell type: Sarcoma tumor
treatment: none
Treatment protocol Tissue used for gene expression analysis was placed immediately into RNAlater before RNA isolation
Growth protocol Spontaneous Tumors from Dogs
Extracted molecule total RNA
Extraction protocol RNAs were extracted with Qiagen RNA easy mini
Label biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description none
Data processing Expression Console (Affymetrix) was used to generate the RMA file
 
Submission date Aug 02, 2010
Last update date Aug 01, 2011
Contact name Jen-Tsan Chi
E-mail(s) jentsan.chi@duke.edu
Phone 919-668-4759
Organization name Duke University
Department Molecular Genetics and Microbiology
Street address 101 Science Drive, DUMC 3382
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL3738
Series (1)
GSE23380 The gene expression response of spontaneous canine sarcomas to thermoradiotherapy – response heterogeneity and combination therapeutics

Data table header descriptions
ID_REF
VALUE RMA normalized data

Data table
ID_REF VALUE
AFFX-BioB-5_at 7.981781
AFFX-BioB-M_at 8.529182
AFFX-BioB-3_at 7.864121
AFFX-BioC-5_at 8.796535
AFFX-BioC-3_at 9.320106
AFFX-BioDn-5_at 11.00278
AFFX-BioDn-3_at 12.16278
AFFX-CreX-5_at 12.94576
AFFX-CreX-3_at 13.27793
AFFX-DapX-5_at 3.124557
AFFX-DapX-M_at 3.62106
AFFX-DapX-3_at 3.770669
AFFX-LysX-5_at 3.096686
AFFX-LysX-M_at 3.535073
AFFX-LysX-3_at 4.219258
AFFX-PheX-5_at 3.216708
AFFX-PheX-M_at 2.980225
AFFX-PheX-3_at 5.476437
AFFX-ThrX-5_at 3.403083
AFFX-ThrX-M_at 3.027646

Total number of rows: 43035

Table truncated, full table size 1230 Kbytes.




Supplementary file Size Download File type/resource
GSM573541.CEL.gz 5.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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