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Sample GSM573542 Query DataSets for GSM573542
Status Public on Aug 01, 2011
Title DC_TREATMENT
Sample type RNA
 
Source name Canine Spontaneous Sarcoma
Organism Canis lupus familiaris
Characteristics cell type: Sarcoma tumor
treatment: hyperthermia
Treatment protocol Tissue used for gene expression analysis was placed immediately into RNAlater before RNA isolation
Growth protocol Spontaneous Tumors from Dogs
Extracted molecule total RNA
Extraction protocol RNAs were extracted with Qiagen RNA easy mini
Label biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description none
Data processing Expression Console (Affymetrix) was used to generate the RMA file
 
Submission date Aug 02, 2010
Last update date Aug 01, 2011
Contact name Jen-Tsan Chi
E-mail(s) jentsan.chi@duke.edu
Phone 919-668-4759
Organization name Duke University
Department Molecular Genetics and Microbiology
Street address 101 Science Drive, DUMC 3382
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL3738
Series (1)
GSE23380 The gene expression response of spontaneous canine sarcomas to thermoradiotherapy – response heterogeneity and combination therapeutics

Data table header descriptions
ID_REF
VALUE RMA normalized data

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.215103
AFFX-BioB-M_at 8.769991
AFFX-BioB-3_at 8.03903
AFFX-BioC-5_at 9.066037
AFFX-BioC-3_at 9.473228
AFFX-BioDn-5_at 11.06366
AFFX-BioDn-3_at 12.29214
AFFX-CreX-5_at 13.00632
AFFX-CreX-3_at 13.42272
AFFX-DapX-5_at 3.031485
AFFX-DapX-M_at 3.463592
AFFX-DapX-3_at 3.565809
AFFX-LysX-5_at 3.157921
AFFX-LysX-M_at 3.716403
AFFX-LysX-3_at 4.542139
AFFX-PheX-5_at 3.200466
AFFX-PheX-M_at 3.120562
AFFX-PheX-3_at 5.39531
AFFX-ThrX-5_at 3.574711
AFFX-ThrX-M_at 3.197342

Total number of rows: 43035

Table truncated, full table size 1230 Kbytes.




Supplementary file Size Download File type/resource
GSM573542.CEL.gz 5.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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