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Sample GSM573558 Query DataSets for GSM573558
Status Public on Aug 01, 2011
Title SK_TREATMENT
Sample type RNA
 
Source name Canine Spontaneous Sarcoma
Organism Canis lupus familiaris
Characteristics cell type: Sarcoma tumor
treatment: hyperthermia
Treatment protocol Tissue used for gene expression analysis was placed immediately into RNAlater before RNA isolation
Growth protocol Spontaneous Tumors from Dogs
Extracted molecule total RNA
Extraction protocol RNAs were extracted with Qiagen RNA easy mini
Label biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description none
Data processing Expression Console (Affymetrix) was used to generate the RMA file
 
Submission date Aug 02, 2010
Last update date Aug 01, 2011
Contact name Jen-Tsan Chi
E-mail(s) jentsan.chi@duke.edu
Phone 919-668-4759
Organization name Duke University
Department Molecular Genetics and Microbiology
Street address 101 Science Drive, DUMC 3382
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL3738
Series (1)
GSE23380 The gene expression response of spontaneous canine sarcomas to thermoradiotherapy – response heterogeneity and combination therapeutics

Data table header descriptions
ID_REF
VALUE RMA normalized data

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.426637
AFFX-BioB-M_at 8.715694
AFFX-BioB-3_at 7.946808
AFFX-BioC-5_at 9.578015
AFFX-BioC-3_at 9.955746
AFFX-BioDn-5_at 10.55457
AFFX-BioDn-3_at 12.00678
AFFX-CreX-5_at 12.95264
AFFX-CreX-3_at 13.37149
AFFX-DapX-5_at 3.8809
AFFX-DapX-M_at 5.268424
AFFX-DapX-3_at 6.185108
AFFX-LysX-5_at 3.173838
AFFX-LysX-M_at 3.381514
AFFX-LysX-3_at 4.482359
AFFX-PheX-5_at 3.52507
AFFX-PheX-M_at 3.285371
AFFX-PheX-3_at 4.950267
AFFX-ThrX-5_at 3.711146
AFFX-ThrX-M_at 3.419614

Total number of rows: 43035

Table truncated, full table size 1230 Kbytes.




Supplementary file Size Download File type/resource
GSM573558.CEL.gz 5.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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