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Sample GSM573563 Query DataSets for GSM573563
Status Public on Aug 01, 2011
Title MI_BASE
Sample type RNA
 
Source name Canine Spontaneous Sarcoma
Organism Canis lupus familiaris
Characteristics cell type: Sarcoma tumor
treatment: none
Treatment protocol Tissue used for gene expression analysis was placed immediately into RNAlater before RNA isolation
Growth protocol Spontaneous Tumors from Dogs
Extracted molecule total RNA
Extraction protocol RNAs were extracted with Qiagen RNA easy mini
Label biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description none
Data processing Expression Console (Affymetrix) was used to generate the RMA file
 
Submission date Aug 02, 2010
Last update date Aug 01, 2011
Contact name Jen-Tsan Chi
E-mail(s) jentsan.chi@duke.edu
Phone 919-668-4759
Organization name Duke University
Department Molecular Genetics and Microbiology
Street address 101 Science Drive, DUMC 3382
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL3738
Series (1)
GSE23380 The gene expression response of spontaneous canine sarcomas to thermoradiotherapy – response heterogeneity and combination therapeutics

Data table header descriptions
ID_REF
VALUE RMA normalized data

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.372491
AFFX-BioB-M_at 8.760854
AFFX-BioB-3_at 8.167732
AFFX-BioC-5_at 9.44205
AFFX-BioC-3_at 9.862343
AFFX-BioDn-5_at 10.53919
AFFX-BioDn-3_at 11.73514
AFFX-CreX-5_at 12.85984
AFFX-CreX-3_at 13.25287
AFFX-DapX-5_at 8.907501
AFFX-DapX-M_at 9.809526
AFFX-DapX-3_at 9.80706
AFFX-LysX-5_at 4.952219
AFFX-LysX-M_at 5.572973
AFFX-LysX-3_at 7.285716
AFFX-PheX-5_at 6.155584
AFFX-PheX-M_at 6.435841
AFFX-PheX-3_at 6.546097
AFFX-ThrX-5_at 6.824183
AFFX-ThrX-M_at 7.078051

Total number of rows: 43035

Table truncated, full table size 1230 Kbytes.




Supplementary file Size Download File type/resource
GSM573563.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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