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Sample GSM5746 Query DataSets for GSM5746
Status Public on Apr 05, 2003
Title Spleen vs Sphingosine-1-phosphate Treated B cell 60min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Sphingosine-1-phosphate Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Sphingosine-1-phosphate for 60min
 
Submission date Apr 05, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE396 Spleen vs Sphingosine-1-phosphate Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0660199 45574.1 39147 65517 65516.8 65517 65517 0.744468 0.669636 722.407 546.437 723 547 28.7065 36.1549 0
2 -0.198852 131.873 83.4264 879.778 642.815 889 640 45.5634 36.6292 707.516 537.446 704 535 21.9439 29.9509 0
3 0.072243 18.0154 21.2758 700.542 547 697 543.5 25.1707 31.3327 697.295 536.678 696 538 20.3063 28.0331 0
4 -0.227371 84.9691 50.3373 803.19 599.19 805 601 38.3688 18.6886 701.656 545.877 699 545 24.1797 29.4128 0
5 0.0450325 16.9659 18.8195 694.261 545.217 687 531 24.871 33.0839 694.463 539.087 695 537 18.6716 28.9221 0
6 -0.24067 396.739 227.948 1251.27 868.308 1244.5 878.5 73.4561 48.8039 696.178 527.184 696 528 20.4829 25.5901 0
7 -0.248575 26.5259 14.9656 702.739 505.87 692 493 46.2653 39.0248 688.04 526.113 686 524 24.0218 32.8837 0
8 0 20.5593 15.5557 672.625 516.667 670 515.5 22.3875 17.0922 676.745 516.287 674 515 21.8077 27.2526 0
9 0.275955 4327.14 8168.75 7303 13059.2 7236 12988 342.04 720.195 682.686 511.994 682 512 18.9259 27.2732 0.916702667
10 0.433965 1023.25 2779.36 2268.58 4681.29 2232.5 4543 498.798 1546.96 687.651 504.466 685.5 504.5 18.3767 27.8779 1.441600526
11 0.0714689 17.0166 20.0605 681.269 511.962 677.5 506 20.352 27.4831 680.133 503.633 680 501.5 18.9318 25.7052 0
12 0 20.3482 19.8341 683.4 520.88 684 526 19.4915 29.5527 675.409 514.069 674 513 23.2099 28.1569 0
13 0 17.2727 15.1408 676.227 511.909 673.5 510 16.0711 18.7233 671.387 513.89 671 513 19.1377 26.6145 0
14 0.070001 965.241 1134.06 2135 2223.85 2153 2187 170.361 208.948 677.186 501.654 676.5 503 22.9301 26.9364 0.232538289
15 0.149374 1690.85 2384.95 3314.11 4071.11 1406.5 1369.5 3065.46 4266.06 682.786 505.422 683 504.5 17.4191 26.0732 0
16 0.232169 2071.77 3535.99 3910.38 5802.62 2851 4200.5 1921.64 3113.22 676.585 510.283 677 509 19.6534 28.5349 0
17 -0.469502 780.552 264.789 1811.55 903.45 1770 869 355.789 135.504 684.329 509.975 682 508.5 21.2847 26.6879 -1.559651884
18 0.0586786 343.034 392.659 1174.7 1122 1183 1120 41.5216 43.6359 691.34 516.497 692 515 24.3318 27.9765 0.19492609
19 0.441953 4228.91 11699.9 7118.14 18630.4 7451 19621.5 1584.1 4974.59 691 525.455 689 522.5 22.1088 32.5658 1.468136087
20 -0.101729 6557.95 5188.47 10744.2 8485.5 11060 8656 976.393 790.964 696.552 534.228 694 530 24.3462 35.2564 -0.337936423

Total number of rows: 16273

Table truncated, full table size 1968 Kbytes.




Supplementary data files not provided

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