NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM5772 Query DataSets for GSM5772
Status Public on Apr 09, 2003
Title Spleen vs SLC (Secondary lymphoid-organ chemokine) Treated B cell 60min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name SLC (Secondary lymphoid-organ chemokine) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated withSLC (Secondary lymphoid-organ chemokine) for 60min
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE398 Spleen vs SLC (Secondary lymphoid-organ chemokine) Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.517373 40523.8 12312.2 48631.3 14973.1 47967 13896.5 6909.87 3282.53 923.436 1116.44 919 1102 65.882 156.327 0
2 -0.658915 225.759 49.5143 964.037 997.037 938 1008 76.9553 109.25 897.841 1111.22 895 1090 76.9187 140.134 0
3 0 138.567 38.2932 810.792 1001.58 816.5 985 41.6058 125.767 857.935 1043.32 854.5 1029 65.2309 108.376 0
4 0 142.652 42.9889 838.769 891.5 845 872.5 63.4409 124.989 865.468 1084.07 858 1075 67.1541 121.666 0
5 0 144.707 42.2208 831.545 1013.18 823 1011.5 44.8094 84.865 883.301 1136.6 879.5 1127.5 68.1212 119.492 0
6 -0.402281 368.489 145.93 1241.93 1150.07 1230.5 1139.5 78.8809 106.712 851.957 1048.69 843 1041 63.8982 109.815 0
7 0 73.2534 79.6226 863.875 1043.75 844 1034.5 62.1361 104.358 863.471 1037.05 857 1016 68.5328 113.389 0
8 0 95.1678 61.7311 860.64 1029.8 854 1023 42.181 98.1933 894.305 1077.61 886 1070 66.2101 118.216 0
9 0.252934 3514.99 6293.02 5323.48 7700.41 5343 7601 187.711 433.58 911.655 1145.84 909 1145 68.2585 131.509 0.840228561
10 0.444673 1007.13 2803.89 2065.21 3906.79 2058.5 3872.5 242.879 752.961 838.169 1002.82 836 990 54.1596 102.064 1.477171732
11 0 61.2721 69.2716 830.038 982.962 816.5 979.5 48.8815 114.458 834.045 990.853 825 975.5 55.5664 101.768 0
12 0 70.1016 71.4737 848.036 1062.39 840.5 1029.5 58.2342 107.965 862.716 1050.06 862 1034.5 63.2924 105.47 0
13 0 63.2646 63.1713 836.679 1003.93 836 982.5 60.2557 92.661 847.859 1021.56 839 1015 55.2709 96.3365 0
14 0.475647 1032.02 3085.56 2103.96 4232.18 2113.5 4308.5 199.275 514.066 843.157 1036.11 833 1024 57.9823 122.666 1.580065133
15 0.280518 2195.28 4188 3614.85 5392.38 2848.5 3438 2647.96 4170.19 860.137 1074.78 850.5 1068 69.5881 130.083 0
16 0.347748 1882.86 4193.4 3181.69 5323.31 2527 4264.5 1288.31 2444.18 825.146 999.261 815 982 56.4832 112.009 0
17 -0.612845 1626.76 396.714 2740.76 1307.24 2140 1204 1473.08 344.499 807.8 936.669 803.5 927 50.5167 96.4487 0
18 0.0170947 199.236 207.235 1008.33 1102.52 1005 1097 44.151 81.6561 817.859 929.135 812 914 49.2607 81.9085 0.056787364
19 0.572509 4013.3 14997.2 5812.89 16900.7 6065.5 17181 1029.86 3111.19 834.045 988.429 824 984 56.0788 103.974 1.901833732
20 0.0347546 6082.6 6589.37 8492.54 8001.79 8443.5 7981.5 1257.74 1236.41 879.35 1089.62 872.5 1087.5 69.9354 128.773 0.115452282

Total number of rows: 16273

Table truncated, full table size 1967 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap