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Sample GSM5791 Query DataSets for GSM5791
Status Public on Apr 09, 2003
Title Spleen vs TGF-beta (transforming growth factor-beta) Treated B cell 30min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name TGF-beta (transforming growth factor-beta) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with TGF-beta (transforming growth factor-beta) for 30min
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE400 Spleen vs TGF-beta (transforming growth factor-beta) Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.346213 43120.6 19430 65447.1 38239.3 65517 34751 229.99 8909.15 725.087 1185 722.5 1181.5 28.3426 58.6354 0
2 -0.0972982 274.647 219.521 1120.85 1579.73 1148.5 1596.5 96.4086 136.315 737.525 1195.72 732 1190 40.73 68.7783 0
3 0 55.3151 26.7166 736.625 1145.83 735.5 1131.5 43.0458 50.9882 753.258 1122.15 722 1117 67.6189 50.1447 0
4 -0.201813 68.7601 43.2039 831.045 1186.82 816.5 1166.5 111.363 82.3689 762.135 1135.37 743 1132 70.046 51.0192 0
5 -0.176336 29.7439 19.818 727.792 1157.71 733 1151 33.1466 62.2586 715.547 1166.89 713 1164.5 22.4301 45.0394 0
6 0.00104364 573.193 574.572 1592.54 2218.04 1672.5 2335.5 171.6 267.389 733.903 1188.94 734 1186 23.4314 48.0706 0
7 -0.383432 58.463 24.1796 777.667 1207.92 769 1192 62.1427 71.2594 725.211 1195.78 722 1196 26.2173 52.1334 0
8 0 22.0273 21.9514 714.833 1153.38 707.5 1147.5 28.4966 35.0438 720.026 1182.71 717 1185 25.7357 53.8575 0
9 0.148684 3731.95 5255.56 6626.58 10592.3 6622.5 10524 413.916 898.048 719.382 1154.13 719 1160 22.4101 48.3799 0.493917557
10 0 20.6932 16.4935 708.296 1145.81 712 1142 24.5902 45.8568 717.42 1161.79 714 1162 24.8824 39.3195 0
11 0.175831 348.149 521.911 1222.56 2100.41 1207 2041 128.804 493.441 714.977 1161.88 712 1159 24.3151 52.3367 0
12 0.0871619 27.3823 33.4681 713.654 1189.5 712.5 1181.5 21.9544 54.0372 703.126 1155.09 700 1154 22.7954 47.9952 0
13 0 19.2897 19.7454 704.231 1140.12 705 1140 18.2172 52.2489 706.316 1144.3 702 1137 23.9921 45.5074 0
14 0.0378808 1160.01 1265.73 2432.63 3447.37 2168 2895 1372.03 1975.88 697.506 1095.49 696 1093 19.0051 36.2884 0
15 0.21607 3845.34 6324.18 6792.35 12465.1 7734 13475 3968.67 7484.53 700.98 1107.2 700 1106 21.5402 39.6159 0
16 0.0622727 1366.38 1577.04 2757.56 4014.16 2881 4195 601.762 764.827 697.914 1090.44 696 1092 21.8073 40.8481 0.206865432
17 -0.424712 910.877 342.569 2074.04 1691.76 1459 1427 1228.91 518.06 693.737 1094.35 690 1096.5 20.0815 40.4849 0
18 -0.0515612 744.721 661.352 1814.04 2303.09 1858 2285 176.092 222.335 699.389 1103.52 699 1101 18.9629 37.0538 -0.171282599
19 0.383024 4326.52 10451.1 7558.57 19884.4 7761.5 20320 853.944 2043.21 697.615 1100.72 696 1098 20.5217 41.9355 1.272378187
20 -0.214768 4518.85 2755.88 7839.16 6045.08 7825 6026 339.432 249.482 696.313 1103.89 695.5 1100.5 19.1309 44.6206 -0.713443853

Total number of rows: 16273

Table truncated, full table size 1966 Kbytes.




Supplementary data files not provided
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