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Sample GSM5804 Query DataSets for GSM5804
Status Public on Apr 09, 2003
Title Spleen vs Tumor necrosis factor-alpha Treated B cell 60min (set2)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Tumor necrosis factor-alpha Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Tumor necrosis factor-alpha for 60min
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE401 Spleen vs Tumor necrosis factor-alpha Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.110553 42134.7 32665.3 65516.7 65516.8 65517 65517 0.599824 0.629941 748.255 2605.8 746 2609 20.9198 95.2312 0
2 -1.95616 321.668 3.55832 774.24 2054.44 767 2039 35.3333 94.4361 736.466 2541.26 735.5 2543 21.5919 83.165 0
3 0 170.123 4.44494 718.84 2338.76 714 2340 26.2673 124.285 734.948 2575.5 735 2575 21.6332 103.887 0
4 0 162.454 4.52881 741.696 2209.43 740 2211 21.2056 69.2826 732.65 2587.19 732 2593.5 20.6581 105.847 0
5 0 156.716 3.52057 717.385 2254 713.5 2267.5 21.8487 95.1849 734.797 2440.61 732 2438.5 19.9285 82.2828 0
6 -2 2126.27 3.82878 1004.58 1992.08 1012 1962 57.6633 125.884 737.325 2387.4 734.5 2377.5 21.9661 89.4864 0
7 0 221.07 5.38239 720.185 2091.04 719 2120 18.5805 162.352 729.082 2267.94 729 2289 28.1119 125.797 0
8 0 230.284 9.76088 728.259 2180.48 726 2188 23.6799 72.5621 731.764 2194.99 732 2199 29.2836 105.109 0
9 0.222749 2521.23 4210.78 5196.12 9149.88 5215.5 9087.5 227.419 416.305 733.728 2326.77 733.5 2331.5 20.4066 97.1051 0.739956161
10 0.238137 539.079 932.802 1609.17 3857.63 1511 3797 423.75 1025.51 727.36 2411.44 729 2414.5 16.916 98.7811 0.791073991
11 0.226094 36.1051 60.7663 723.042 2548.71 723 2550 11.7713 83.2599 721.92 2486.04 721 2491.5 21.3569 90.4696 0
12 0.538471 25.549 88.2767 737.357 2645.86 739.5 2659 24.9298 95.0652 728.863 2552.05 730 2560 19.9232 89.2234 0
13 0.0656467 38.7118 45.0288 740.593 2411.89 736 2432 18.4792 82.3764 739.401 2414.98 736 2413 21.6267 97.9632 0
14 0.219538 447.271 741.497 1461.19 3485.74 1459 3480 121.025 213.595 741.987 2363.8 741 2373 20.0467 113.981 0.72928945
15 0.158337 1322.39 1904.12 3020.93 5269.54 1362.5 2851 2753.7 4031.58 737.743 2238.97 737 2221.5 20.5309 113.224 0
16 0.215712 1273.9 2093.37 2939.88 5589.04 2360 4625.5 1295.92 1982.78 737.929 2237.4 736 2235.5 19.0883 73.3406 0
17 -0.500496 674.874 213.171 1793.95 2462.4 1561.5 2435 532.897 112.351 740.212 2300.48 737 2294 21.0033 84.1439 0
18 0.405372 136.392 346.865 953.462 2795.46 951.5 2799.5 40.9705 164.915 748.748 2361.6 748 2355 19.0519 86.838 1.346616636
19 0.473246 3314.79 9856.05 6628.88 18685.3 6762.5 19148 1377.51 3976.06 747.786 2426.34 745 2424 19.6002 87.9778 1.572089183
20 -0.0492915 2484.17 2217.64 5081.74 5897.43 5019 5918 399.134 368.379 739.771 2371.92 740 2370 16.2871 83.5947 -0.163742819

Total number of rows: 16273

Table truncated, full table size 1961 Kbytes.




Supplementary data files not provided

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