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Sample GSM5818 Query DataSets for GSM5818
Status Public on Apr 09, 2003
Title Spleen vs Untreated B cell Time 0 (set8)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Untreated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from untreated mouse (male c57BL/6) B cells
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE402 Spleen vs Untreated, cultured B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.13206 72385.3 53406.1 65516.8 65509.2 65517 65517 0.813575 24.5783 736.081 857.739 734 855 22.9279 44.0662 0
2 -0.224441 125.478 74.8388 811.174 858.565 811 846 28.6922 45.4391 713.234 828.81 712 828.5 22.7336 34.4785 0
3 0.157243 62.945 90.4075 725.667 867.19 724 860 22.701 50.8985 696.791 817.462 693.5 818 24.6791 33.3485 0
4 -0.324914 62.7868 29.7135 709.643 795.393 712 792.5 15.0904 44.076 688.242 821.373 686 819 21.3632 35.8524 0
5 -0.0170993 48.9419 47.0523 721.462 868.423 722 867 27.5786 46.0436 710.088 861.453 706 860 28.0459 48.2278 0
6 -0.132632 322.137 237.361 1054 1055.33 1058 1042 51.7821 75.7547 721.769 876.344 719 870 26.697 42.3683 0
7 -0.0286318 66.8189 62.5558 737.393 874.179 731 863.5 37.5769 41.0772 706.224 852.545 701 842 26.4115 42.0222 0
8 0 26.2245 31.4191 694.179 834.714 696.5 829.5 21.6197 38.7029 708.019 845.225 706 842 22.9164 39.002 0
9 0.166221 4835.43 7090.15 5799.8 8046.12 5822 8040 362.022 556.612 706.128 841.699 707.5 844 21.9244 40.0671 0.55217421
10 0.388287 916.088 2239.88 1661.17 3036.83 1673 2777 298.648 846.012 702.544 843.656 700 840 21.4508 35.6479 1.289861494
11 -0.0447367 59.1714 53.3796 715.16 841 715 840 28.35 42.6361 692.782 828.177 691.5 829.5 23.6621 38.8671 0
12 0.127113 35.3159 47.3241 669.429 800.571 672 806.5 24.7632 40.5384 671.744 792.026 670 791 20.9973 30.2983 0
13 0.0195284 41.3491 43.2508 678.538 810.808 673 813 25.4499 28.1127 675.075 807.275 675 804.5 24.4632 41.9754 0
14 0.290407 799.238 1559.85 1517.88 2325.15 1535.5 2351 145.423 311.941 687.063 810.145 684 808 22.8001 38.313 0.964711172
15 0.350236 1894.65 4243.9 2692.23 5034.08 1335.5 2270.5 2251.72 4711.47 682.178 815.98 679 813 21.9958 35.3801 0
16 0.305223 2452.96 4953.51 3289.52 5769.84 2834 5275 1169.35 2045.19 687.83 817.843 684 821 23.9332 38.1403 0
17 -0.658232 1296.39 284.775 2061.05 1052.38 1817 1031 631.024 110.909 689.424 814.532 689 813.5 22.1757 33.8368 0
18 0.0214569 263.364 276.703 953.037 1023.81 952 1033 34.2328 36.6753 687.491 807.677 686 802 20.8051 34.5629 0.071278279
19 0.431827 6998.38 18915.8 7850.14 20717.7 7881.5 21252 1193.59 3197.36 690.265 806.031 688 806 20.1327 32.5022 1.434498243
20 -0.142348 6511.56 4691.77 7573.46 5549.69 7268 5372.5 981.555 727.948 690.331 806.233 690 804 21.9084 34.5187 -0.47286982

Total number of rows: 16273

Table truncated, full table size 1968 Kbytes.




Supplementary data files not provided

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