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Sample GSM5821 Query DataSets for GSM5821
Status Public on Apr 09, 2003
Title Spleen vs Untreated B cell Time 0 (set11)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Untreated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from untreated mouse (male c57BL/6) B cells
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE402 Spleen vs Untreated, cultured B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.158525 49872 34620.3 65516.9 59477.4 65517 59291.5 0.662687 4094.76 770.34 1107.05 771 1107 31.4807 50.6578 0
2 -0.692264 113.701 23.0941 819.577 1005.46 816.5 1004.5 28.9001 63.3986 766.191 1089.76 765 1083 30.9694 53.6809 0
3 0.0775491 51.7524 61.8699 773.783 1115.17 768 1114 33.3793 39.0287 764.459 1088.96 760 1088 29.6925 49.1865 0
4 -0.434911 47.046 17.2827 732.75 933.875 735.5 939.5 19.109 38.6279 748.083 1061.77 743.5 1062 29.693 46.2173 0
5 -0.100071 51.0196 40.5197 750.92 1028.84 751 1031 27.465 42.2411 744.453 1038.58 743 1037 25.4381 42.6567 0
6 -0.143444 319.353 229.524 1202.59 1254.52 1130 1125 184.766 268.054 746.083 1024.31 742 1021.5 26.0496 46.6672 0
7 -0.151886 53.591 37.7752 756.84 1021.08 758 1010 38.8573 31.6042 747.422 1035.81 745 1035 28.7593 47.0467 0
8 0.0804696 50.0017 60.1803 751.885 1050.42 752.5 1055 26.9775 47.4031 744.987 1026.73 745.5 1022 28.243 45.8245 0
9 0.177542 7096.76 10680.7 10831.9 17328.4 10896.5 17131 571.408 1037.27 744.081 1016.35 741 1016 28.7717 49.2306 0.589781758
10 0.453454 817.818 2323.33 1948.68 4223.61 1667.5 3759 599.481 1753.24 738.692 1010.35 735 1007 27.0466 53.6214 0
11 -0.0448296 35.1005 31.658 720.815 1017.59 722 1017 23.6351 43.4584 734.857 1041.31 738 1043 26.7934 40.518 0
12 -0.0110665 41.5373 40.4922 713.28 1038 713 1023 28.1003 60.4063 718.73 1046.72 716.5 1045.5 31.3861 52.558 0
13 0.0460803 50.1942 55.8128 728.769 1073.81 718.5 1063 33.2594 55.5381 721.962 1057.45 724 1053 29.2427 51.0874 0
14 0.317464 1081.29 2245.99 2341.86 4199.45 2346 4126 259.406 533.746 729.484 1086.78 729 1093 25.2158 60.5448 1.054592581
15 0.314769 2137.07 4411.51 3892 7494.13 2123.5 3549 3081.98 6187.47 742.289 1122.77 740 1120 31.9573 54.8092 0
16 0.381091 2041.38 4909.24 3756.43 8234.86 3208 6633 1271.21 3121.69 754.063 1125.91 755 1121 26.7683 54.5294 0
17 -0.792829 1383.43 222.91 2871.4 1392.7 2469 1368 1075.6 119.2 754.084 1165.94 752 1168 27.0034 53.3691 0
18 -0.512804 262.104 80.4767 1098.25 1222.18 1103.5 1225.5 27.2432 74.6994 763.65 1187.91 763 1185 31.1828 60.3735 0
19 0.432368 8197.25 22183.8 12080.8 36135.8 12626.5 36410 1827.01 5839.81 755.406 1161.55 751.5 1162.5 27.3457 56.9203 1.436295407
20 -0.133262 6388.9 4700.71 10052.2 8085.38 9715.5 7931 1235.33 921.509 748.968 1128.81 747 1126 29.4255 57.1351 -0.442686782

Total number of rows: 16273

Table truncated, full table size 1977 Kbytes.




Supplementary data files not provided
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