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Sample GSM5847 Query DataSets for GSM5847
Status Public on Apr 09, 2003
Title Spleen vs Untreated B cell 120min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Untreated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from untreated mouse (male c57BL/6) B cells cultured for 120min
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE402 Spleen vs Untreated, cultured B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0723535 62630.4 53019 65516.7 65516.7 65517 65517 0.724303 0.724303 688.095 1109.55 688.5 1103 44.5361 86.5162 0
2 -0.430692 106.362 39.4543 678.731 820.846 678 817 29.9821 63.0465 692.42 1121.86 686 1116 47.0559 94.7776 0
3 -0.428323 92.6118 34.5417 663 954.926 652 979 46.5585 105.38 683.908 1111.8 679.5 1107 45.5449 82.9764 0
4 -0.511012 102.178 31.5025 660.2 905 657 888 31.5026 53.3331 676.086 1105.01 670 1100 39.8417 75.6758 0
5 0 90.0741 37.5926 651.208 924.917 645.5 932 54.8254 107.39 675.638 1072.89 664 1060 47.2848 90.3055 0
6 -0.702771 318.476 63.1402 905.955 1041.64 886 1045 65.4461 51.9373 676.473 1082.9 672 1082 39.41 84.8077 0
7 0 91.9692 37.3253 646.32 920.32 644 907 32.3042 97.3446 682.384 1095.72 673.5 1095 48.2797 89.6634 0
8 0.0916702 97.2155 120.062 690.6 1085.72 679 1066 43.091 74.6757 671.447 1036.01 660 1033 53.8951 102.689 0
9 0.337168 4169.85 9063.34 5541.04 10361.8 5492 10325 270.691 577.355 621.02 926.338 617 920 28.7403 67.5141 1.120047852
10 0.496155 1163.78 3647.77 1910.08 4799.48 1742 4310 484.028 1584.9 629.835 949.568 623 949 38.074 75.5551 1.648191234
11 0.106624 82.3465 105.261 653.154 1024.69 649.5 1023.5 36.2378 65.6937 649.081 992.446 641 977.5 48.566 103.159 0
12 0.119502 82.2467 108.298 657.48 1064.6 651 1046 41.9882 86.1907 653.359 1028.35 648 1028 35.417 72.5266 0
13 0.131058 109.495 148.065 676.68 1081.8 676 1085 29.4473 74.3466 644.038 997.962 643 1002.5 34.6587 99.3634 0
14 0.464699 747.47 2179.18 1403.5 3283.46 1446 3290 138.938 344.525 639.76 934.62 634 929.5 36.6598 77.1101 1.543696664
15 0.19579 2175.96 3415.4 3129.33 4503.78 1134 1744 3032.96 4491.21 637.151 961.603 633 960.5 36.2092 78.0911 0
16 0.34585 1955.43 4336.04 2883.32 5500.4 2337 4369 1054.13 2242.82 644.448 984.779 638 972.5 39.1601 79.3981 0
17 -0.538742 1032.49 298.638 1634.23 1239.45 1383.5 1147 599.81 190.548 644.621 988.601 634 974 40.7003 81.6656 0
18 0.468792 315.642 928.939 902.857 2009.82 891.5 2036.5 62.4012 113.702 648.918 982.981 643.5 972 42.0403 83.5087 1.557293315
19 0.541119 4833.88 16804.1 6283.42 18695.6 6226 18540 1209.88 3614.92 629.8 913.703 626 913 36.39 58.5605 1.797558409
20 0.0664542 5790.89 6748.38 7489.5 7909.85 7382.5 7946 976.093 977.671 631.506 912.327 625.5 912.5 40.256 66.5955 0.220756074

Total number of rows: 16273

Table truncated, full table size 1971 Kbytes.




Supplementary data files not provided
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