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Sample GSM60398 Query DataSets for GSM60398
Status Public on Dec 06, 2005
Title tumor immune evasion - P0 cell line-replicate 2
Sample type RNA
Source name mouse cancer cell line, P0/TC-1
Organism Mus musculus
Characteristics strain - C57BL/6
gender - female
tissue - P0/TC-1 is a cancer cell line derived from lung fibroblasts.
Treatment protocol P0 is a cancer cell line susceptible to immune attack. This is a control cell line.
Growth protocol The cell line was cultured in vitro in 10-cm dishes until 70-75% confluency and then total RNA was isolated.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRIzol reagent (Invitrogen), followed by a clean-up step using RNeasy mini kit (Qiagen).
Label biotin-labeled cRNA, detected with streptavidin phycoerythin conjugate
Description This is one of 4 biological replicates for P0 control cell line.
Data processing background correction made with RMA, Quantile Normalization, GC-RMA
Submission date Jun 06, 2005
Last update date Jun 07, 2005
Contact name Ken-Yu Lin
Phone 410-614-4906
Organization name Johns Hopkins University School of Medicine
Department Pathology
Lab T.-C. Wu
Street address 720 Rutland Ave, Ross 512
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL1261
Series (1)
GSE2774 Identification of tumor immune evasion mechanism using P0 and P3 cell lines

Data table header descriptions
VALUE data with quantile normalization

Data table
1415670_at 2752.234273
1415671_at 562.334184
1415672_at 2730.643644
1415673_at 575.691683
1415674_a_at 1079.088651
1415675_at 510.523907
1415676_a_at 5174.301369
1415677_at 1086.767393
1415678_at 955.585386
1415679_at 1528.976205
1415680_at 2818.481772
1415681_at 666.565316
1415682_at 775.458382
1415683_at 2764.888565
1415684_at 344.228086
1415685_at 443.744694
1415686_at 2132.510227
1415687_a_at 5017.981671
1415688_at 945.773445
1415689_s_at 102.052788

Total number of rows: 45101

Table truncated, full table size 932 Kbytes.

Supplementary data files not provided

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